View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7353_high_3 (Length: 269)

Name: NF7353_high_3
Description: NF7353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7353_high_3
NF7353_high_3
[»] chr2 (5 HSPs)
chr2 (13-269)||(43011256-43011512)
chr2 (13-269)||(43013553-43013809)
chr2 (13-263)||(25202979-25203229)
chr2 (157-269)||(35075299-35075411)
chr2 (13-85)||(35075408-35075480)
[»] chr1 (1 HSPs)
chr1 (13-269)||(25675856-25676112)
[»] chr8 (1 HSPs)
chr8 (13-269)||(15090163-15090424)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 43011512 - 43011256
Alignment:
Q  13 tggacatcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaattcctctgatctctatccattcgc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43011512 tggacatcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaattcctctgatctctatccattcgc 43011413  T
Q  113 cttgatagtcgaaacgcannnnnnnctcaacccaatcaatgcatgtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcgcaa 212  Q
    ||||||||||||||||||       |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43011412 cttgatagtcgaaacgcatttttttctcaacccaatcgatgcaagtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcgcaa 43011313  T
Q  213 ctcaagaagcataacatctatctcacattcaaccccttgaacagaaataattacacc 269  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43011312 ctcaaaaagcataacatctatctcccattcaaccccttgaacagaaataattacacc 43011256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 43013809 - 43013553
Alignment:
Q  13 tggacatcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaattcctctgatctctatccattcgc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43013809 tggacatcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaattcctctgatctctatccattcgc 43013710  T
Q  113 cttgatagtcgaaacgcannnnnnnctcaacccaatcaatgcatgtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcgcaa 212  Q
    ||||||||||||||||||       |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43013709 cttgatagtcgaaacgcatttttttctcaacccaatcgatgcaagtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcgcaa 43013610  T
Q  213 ctcaagaagcataacatctatctcacattcaaccccttgaacagaaataattacacc 269  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43013609 ctcaaaaagcataacatctatctcccattcaaccccttgaacagaaataattacacc 43013553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 25202979 - 25203229
Alignment:
Q  13 tggacatcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaattcctctgatctctatccattcgc 112  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |    
T  25202979 tggacatcacaatgcaactaaccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaatacctatgatctcaatccattcac 25203078  T
Q  113 cttgatagtcgaaacgcannnnnnnctcaacccaatcaatgcatgtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcgcaa 212  Q
    | ||||||||||||| ||       |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| | |    
T  25203079 cctgatagtcgaaacacatttttttctcaacccaatcgatgcaagtacatccaatttgtgtcagtcatgccatccccaatactagatcataaccgcccta 25203178  T
Q  213 ctcaagaagcataacatctatctcacattcaaccccttgaacagaaataat 263  Q
    ||||| |||||||||||||||||| |||| |||| |||||| |||||||||    
T  25203179 ctcaaaaagcataacatctatctcccatttaaccacttgaagagaaataat 25203229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 157 - 269
Target Start/End: Complemental strand, 35075411 - 35075299
Alignment:
Q  157 gtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcgcaactcaagaagcataacatctatctcacattcaaccccttgaacag 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||| ||||||||||||||||||     
T  35075411 gtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcccaactcaaaaagcttaagatctatctcccattcaaccccttgaacaa 35075312  T
Q  257 aaataattacacc 269  Q
    || |||| |||||    
T  35075311 aattaataacacc 35075299  T

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Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 35075480 - 35075408
Alignment:
Q  13 tggacatcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtac 85  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35075480 tggacatcacaatgcaactgaccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtac 35075408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 25675856 - 25676112
Alignment:
Q  13 tggacatcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaattcctctgatctctatccattcgc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25675856 tggacatcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaattcctctgatctctatccattcgc 25675955  T
Q  113 cttgatagtcgaaacgcannnnnnnctcaacccaatcaatgcatgtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcgcaa 212  Q
    ||||||||||||||||||       |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25675956 cttgatagtcgaaacgcatttttttctcaacccaatcgatgcaagtacatccaatttgtgtcagccatgccatccccaatactagatcataaccgcgcaa 25676055  T
Q  213 ctcaagaagcataacatctatctcacattcaaccccttgaacagaaataattacacc 269  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25676056 ctcaaaaagcataacatctatctcccattcaaccccttgaacagaaataattacacc 25676112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 15090163 - 15090424
Alignment:
Q  13 tggacatcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggagtgcactctctagtacgaattcctctgatctctatccattcgc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||| |||||||| |    
T  15090163 tggacatcacaatgcaactggccaaaatgattttcatcaacatagttttgtaatggattgcactct--agtacgaattcctctgatctcaatccattcac 15090260  T
Q  113 cttgatagtcgaaacgcannnnnnn-------ctcaacccaatcaatgcatgtacatccaatttgtgtcagccatgccatccccaatactagatcataac 205  Q
    | ||||||||||||| |               |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15090261 cctgatagtcgaaacactttttttttttttttctcaacccaatcgatgcaagtacatccaatttgtgtcagccatgccatccccaatactagatcataac 15090360  T
Q  206 cgcgcaactcaagaagcataacatctatctcacattcaaccccttgaacagaaataattacacc 269  Q
    ||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  15090361 cgcccaactcaaaaagcataatatctatctcccattcaaccccttgaacagaaataataacacc 15090424  T

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