View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7353_low_1 (Length: 454)
Name: NF7353_low_1
Description: NF7353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7353_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Complemental strand, 2152013 - 2151594
Alignment:
| Q |
20 |
cagaacagtgtggtcattgactacattcttaaggtaatagtccagattcaccaaatatagttaacttgtgaaacaagaaa-ggttttaattactcctttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2152013 |
cagaacagtgtggtcattgactacattcttaaggt--tagtccagattcaccaaatatagttaacttgtgaaacaagaaaaggttttaattactcctttg |
2151916 |
T |
|
| Q |
119 |
tgatatgttgcagattttgggacttgatgtttgtgccgacacaatggtaggagaccaaatgataagaggtatctcaggaggcgagaaaaagcgactcact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151915 |
tgatatgttgcagattttgggacttgatgtttgtgccgacacaatggtaggagaccaaatgataagaggtatctcaggaggcgagaaaaagcgactcact |
2151816 |
T |
|
| Q |
219 |
acaggtaaaatatatttgacaaggaaaaacatgacaaagaaactgaaaacctttatctgaaacttaaataatgaggtttatgattaataatattttgtga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151815 |
acaggtaaaatatatttgacaaggaaaaacatgacaaagaaactgaaaacctttatctgaaacttaaataatgaggtttatgattaataatattttgtga |
2151716 |
T |
|
| Q |
319 |
aggtgagatgctggttggacctataaaggtgttgttcatggatgagatatcaaatggtttggacagttcaacaacttttcagataatcaactcaatcaag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151715 |
aggtgagatgctggttggacctataaaggtgttgttcatggatgagatatcaaatggtttggacagttcaacaacttttcagataatcaactcaatcaag |
2151616 |
T |
|
| Q |
419 |
caatctattcatattctaaatg |
440 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2151615 |
caatctattcatattctaaatg |
2151594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 318 - 440
Target Start/End: Complemental strand, 2163990 - 2163868
Alignment:
| Q |
318 |
aaggtgagatgctggttggacctataaaggtgttgttcatggatgagatatcaaatggtttggacagttcaacaacttttcagataatcaactcaatcaa |
417 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||| ||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
2163990 |
aaggggagatgctggttggaccaataagggtattgttcatggacgaaatatcaactggtttggacagttcaacaacttttcaaataatcagctcaatcag |
2163891 |
T |
|
| Q |
418 |
gcaatctattcatattctaaatg |
440 |
Q |
| |
|
||||| || ||||||||||||| |
|
|
| T |
2163890 |
acaatcaatccatattctaaatg |
2163868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 2164352 - 2164250
Alignment:
| Q |
123 |
atgttgcagattttgggacttgatgtttgtgccgacacaatggtaggagaccaaatgataagaggtatctcaggaggcgagaaaaagcgactcactacag |
222 |
Q |
| |
|
||||| |||||||||||| | || | |||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||| || |||| |||| |
|
|
| T |
2164352 |
atgttacagattttgggattggaaatatgtgccgacattatggtaggagatggaatgataagaggtatttcaggagggcagaaaaagagagtcacaacag |
2164253 |
T |
|
| Q |
223 |
gta |
225 |
Q |
| |
|
||| |
|
|
| T |
2164252 |
gta |
2164250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 323 - 440
Target Start/End: Complemental strand, 8537451 - 8537334
Alignment:
| Q |
323 |
gagatgctggttggacctataaaggtgttgttcatggatgagatatcaaatggtttggacagttcaacaacttttcagataatcaactcaatcaagcaat |
422 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||| ||||||| ||| |||||||||| || ||||||||| ||||| | |||||||| | ||| |
|
|
| T |
8537451 |
gagatgctggttggacctataagggtcttgttcatggatgaaatatcaactggcttggacagtttaaaaacttttcaaataataagctcaatcaggaaat |
8537352 |
T |
|
| Q |
423 |
ctattcatattctaaatg |
440 |
Q |
| |
|
| || ||||||||||||| |
|
|
| T |
8537351 |
caatccatattctaaatg |
8537334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University