View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7354_high_4 (Length: 409)
Name: NF7354_high_4
Description: NF7354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7354_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 31638857 - 31638471
Alignment:
| Q |
9 |
tcgtgttgatgtgtccgatacctagatacgcattcaatcagaaatgttgatactatgcatgctatataagtatatagcattgaagtaacttacattattt |
108 |
Q |
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| T |
31638857 |
tcgtgttgatgtgtccgatacctagatacgcattcaatcagaaatgttgatattatgcatgctatataagtatatagcattgaagtaacttacattattt |
31638758 |
T |
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| Q |
109 |
gtgtacttaaccatccttcatatttatcttccagcatctgtggaagatcccaatgatatagagttacaaaaggctggattcctaagtggatagaaaatat |
208 |
Q |
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| T |
31638757 |
gtgtacttaaccatccttcatatttatcttccagcatctgtggaagatcccaatgatatagagttacaaaaggctggattcctatgtggatagaaaatat |
31638658 |
T |
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| Q |
209 |
aaaaatttagtattactaagtaaattttttctatttttaagatcacatttcaaaatgaattctgtagtaacctttttctaataaagcatcaatgagggtg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31638657 |
aaaaatttagtattactaagtaaattttttctatttttaagatcacatttcaaaatgaattctgtagtaacctttttctaataaagcatcaatgagggtg |
31638558 |
T |
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| Q |
309 |
ttgtaatattttattccctctgtatttggttcccctgttccatctgttaaattgttgcaaaattagcattaaaatctaccaagttac |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31638557 |
ttgtaatattttattccctctgtatttggttcccctgttccatctgttaaattgttgcaaaattagcattaaaatctaccaagttac |
31638471 |
T |
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