View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7354_high_7 (Length: 372)
Name: NF7354_high_7
Description: NF7354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7354_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 197 - 360
Target Start/End: Original strand, 44218035 - 44218203
Alignment:
| Q |
197 |
atgttagagcagagagtacaacccattcccctattccaatattagcatat-----accggttccttccttcatccaataagttgatcaagaacgtgaata |
291 |
Q |
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| T |
44218035 |
atgttagagcagagagtacaacccattcccctattccaatattagcatatcatgcaccggttccttccttcatccaataagttgatcaagaacgtgaata |
44218134 |
T |
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| Q |
292 |
ctttaatttcgcataaaaacaccatgctgcatatgtattggtttttaattagttttaacagttttagta |
360 |
Q |
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| T |
44218135 |
ctttaatttcgcataaaaacaccatgctgcatatgtattggtttttaatttgttttaacagttttagta |
44218203 |
T |
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Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 44212806 - 44212945
Alignment:
| Q |
1 |
tgtagtggaaattttttagcagctagatggatgacatgtttataagagaaggagctatagaataaaattcaattaaatctttgaggttttgcttgcggtc |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44212806 |
tgtagtggaaatttttgagcagctagatggatgacatgtttataaaagaaggagctatagaataaaattcaattaaatctttgaggttttgcttgcggtc |
44212905 |
T |
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| Q |
101 |
aagctatacatacatgttagacatgttcatttaccatagc |
140 |
Q |
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| T |
44212906 |
aagctatacatacatgttatacatgttcatttaccatagc |
44212945 |
T |
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