View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7354_low_2 (Length: 501)
Name: NF7354_low_2
Description: NF7354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7354_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 246 - 486
Target Start/End: Original strand, 40569604 - 40569845
Alignment:
| Q |
246 |
tgaggttgagccaggtttgttcaacagtgaagagttgctgaggaaagtaaaaattcattaactcgaatgaattcgtggaaagtgattcggaaccatatcg |
345 |
Q |
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| T |
40569604 |
tgaggttgagccaggtttgttcaacagtgaagagttgctgaggaaagtaaaaattcattaactcgaatgaattcgtggaaagtgattcggaaccatatcg |
40569703 |
T |
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| Q |
346 |
gattctctgctccgtcatctcttccgccgttccgtgcattccgtttccggcttacctccgtctccgtgtccttgcgtgcacggtgattgataaccgcggg |
445 |
Q |
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| T |
40569704 |
gattctctgctccgtcatctcttccgccgttccgtgcattccgtttccggcttacctccgtctccgtgtccttgcgtgcacggtgattgataaccgcggg |
40569803 |
T |
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| Q |
446 |
aaaatgtgaagattgaaat-aaaggtaaagtcgatttcatcc |
486 |
Q |
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| T |
40569804 |
aaaatgtgaagattgaaataaaaggtaaattcgatttcatcc |
40569845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 40569359 - 40569572
Alignment:
| Q |
1 |
tatccgaacgtgataagcacttattcatagaagatccaaatgatcacagtataaagataccaaaatctaattaaaaacaaatacgactaaaattgcacaa |
100 |
Q |
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| T |
40569359 |
tatccgaacgtgataagcacttattcatagaagatccaaatgatcacagtataaagataccaaaatctaattaaaaacaaatacgactaaaattgcacaa |
40569458 |
T |
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| Q |
101 |
attagaaacctaatattgacttataatagttgaaatttgaaattcctaactaacatgaaatgaaatgagaagtggagaaaatgaaatacctgagaaacga |
200 |
Q |
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| T |
40569459 |
attagaaacctaatattgacttataatagttgaaatttgaaattcctaactaacatgaaatgaaatgagaagtggagaaaatgaaatacctgagaaacga |
40569558 |
T |
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| Q |
201 |
tgttttggcctatg |
214 |
Q |
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| T |
40569559 |
tgttttggcctatg |
40569572 |
T |
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