View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7354_low_3 (Length: 500)
Name: NF7354_low_3
Description: NF7354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7354_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Original strand, 43462461 - 43462937
Alignment:
| Q |
8 |
gagaagaatcaattttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggagaaggggaattcggaactacttcactttg |
107 |
Q |
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| T |
43462461 |
gagaagaatcaattttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggagaaggggaatttggaactacttcactttg |
43462560 |
T |
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| Q |
108 |
tttggagaaatcaaccgggaaaaggtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggatggagattaag |
207 |
Q |
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| T |
43462561 |
tttggagaaatcaaccgggaaaacgtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggagggaaattaag |
43462660 |
T |
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| Q |
208 |
ataatgcatcacttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggag |
307 |
Q |
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| T |
43462661 |
ataatgcatcacttggttgggagtctaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggag |
43462760 |
T |
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| Q |
308 |
gtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaactattgttagtgttgttgagacttgtcactc |
407 |
Q |
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| T |
43462761 |
gtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaactatcgttagtgttgttgagacttgtcactc |
43462860 |
T |
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| Q |
408 |
acgtggagttatgcatcgtgatcttaagcctgaaaattttctttttgttgatggacatgaatattcaactcttaaag |
484 |
Q |
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| T |
43462861 |
acgtggagttatgcattgtgatcttaagcctgaaaattttctttttgttgatggacatgaagattcaactcttaaag |
43462937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 20 - 481
Target Start/End: Original strand, 43453034 - 43453495
Alignment:
| Q |
20 |
ttttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggagaaggggaattcggaactacttcactttgtttggagaaatc |
119 |
Q |
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| T |
43453034 |
ttttgttgacaaacaatggtccttttagggaattttataagttaggagatgaacttgggaaaggaaagtttggaactacttcactttgtttggagaaatc |
43453133 |
T |
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| Q |
120 |
aaccgggaaaaggtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggatggagattaagataatgcatcac |
219 |
Q |
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| T |
43453134 |
aaccaggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagagaatgatatagaggatgtgaggagggagattgaaataatgcatcac |
43453233 |
T |
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| Q |
220 |
ttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggaggtgagttgtttg |
319 |
Q |
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| T |
43453234 |
ttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttg |
43453333 |
T |
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| Q |
320 |
ataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaactattgttagtgttgttgagacttgtcactcacgtggagttat |
419 |
Q |
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| T |
43453334 |
acaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaagaacgattgttaatgttgttgaggcttgtcactcacgtggagttat |
43453433 |
T |
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| Q |
420 |
gcatcgtgatcttaagcctgaaaattttctttttgttgatggacatgaatattcaactctta |
481 |
Q |
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| T |
43453434 |
gcatcgtgatcttaagcctgaaaatttcctttttgttgatggagatgaagattccactctta |
43453495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 80 - 456
Target Start/End: Complemental strand, 24421188 - 24420812
Alignment:
| Q |
80 |
aaggggaattcggaactacttcactttgtttggagaaatcaaccgggaaaaggtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatga |
179 |
Q |
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||||| |||| |||||||| | |||||| |||||||||| || |||||| ||||||||||||| |||| ||| ||| ||||| || || || |
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| T |
24421188 |
aagggcaatttggaactacattcctttgtgtggagaaatctactgggaaagagtatgcatgcaagtcaatcatgaagaggaagttgttgactgaagagga |
24421089 |
T |
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| Q |
180 |
tgtagaggatgtgaggatggagattaagataatgcatcacttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtt |
279 |
Q |
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||| || |||||||||| |||||| |||| ||||||||||||| ||| ||| | |||||||| | || || | || || ||| ||| ||| || |||| |
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| T |
24421088 |
tgtggaagatgtgaggagagagattcagattatgcatcacttggctggcagttcgaatgtgatttcgattaaggaagcttctgaggatgctgttgctgtt |
24420989 |
T |
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| Q |
280 |
tatattgtcatggaattatgtaaaggaggtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaacta |
379 |
Q |
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| T |
24420988 |
catgttgttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattatacagaaagaaaggcggcgaaacttgcaaggacta |
24420889 |
T |
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| Q |
380 |
ttgttagtgttgttgagacttgtcactcacgtggagttatgcatcgtgatcttaagcctgaaaattttctttttgtt |
456 |
Q |
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| T |
24420888 |
ttgttggtgttattcagtcatgtcattctcttggtgtaatgcatcgcgatcttaagccggagaattttctttttgtt |
24420812 |
T |
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