View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7354_low_6 (Length: 402)
Name: NF7354_low_6
Description: NF7354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7354_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 293 - 402
Target Start/End: Complemental strand, 4679834 - 4679725
Alignment:
| Q |
293 |
agaaaacggaaacaatttaagtaatatgtttgagcacttttctgaataaagaagatttgtgctttttctcattgctagtcttgacttcaagcttttccaa |
392 |
Q |
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| T |
4679834 |
agaaaacagaaacaatttaagtaatatgtttgagcacttttctgaataaagaagatttgtgctttttctcattgctagtcttgacttcaagcttttccaa |
4679735 |
T |
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| Q |
393 |
catgctctcc |
402 |
Q |
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|||||||||| |
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| T |
4679734 |
catgctctcc |
4679725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 323
Target Start/End: Original strand, 15593801 - 15593903
Alignment:
| Q |
222 |
acaagagcctgagagggatctttatctggaagcaaggtctttaaataagttaataaaacta-aaaacaagacagaaaacggaaacaatttaagtaatatg |
320 |
Q |
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| T |
15593801 |
acaagtgcctgatagggatcttgatttggaagcaaggttttcaaatatgctactaaaactagaaaacaagacagaaaacacaaacaatttaagcaacatg |
15593900 |
T |
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| Q |
321 |
ttt |
323 |
Q |
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||| |
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| T |
15593901 |
ttt |
15593903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 1767146 - 1767227
Alignment:
| Q |
235 |
agggatctttatctggaagcaaggtctttaaataagttaataaaact-aaaaacaagacagaaaacggaaacaatttaagta |
315 |
Q |
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| T |
1767146 |
agggatcttgatcttgaagcaaggttttcaaatatgttactaaaactaaaaaacaagaaagaaaacagaaacaatttaagta |
1767227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 8658295 - 8658351
Alignment:
| Q |
340 |
aaagaagatttgtgctttttctcattgctagtcttgacttcaagcttttccaacatg |
396 |
Q |
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| T |
8658295 |
aaagaagatttgtgcttattctcaatgccagtattgactacaagcttttccaacatg |
8658351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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