View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7354_low_7 (Length: 378)

Name: NF7354_low_7
Description: NF7354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7354_low_7
NF7354_low_7
[»] chr1 (4 HSPs)
chr1 (1-360)||(4679320-4679679)
chr1 (31-338)||(29464921-29465229)
chr1 (4-327)||(15594081-15594404)
chr1 (67-209)||(29214509-29214652)
[»] chr2 (1 HSPs)
chr2 (1-314)||(16658335-16658645)
[»] chr7 (10 HSPs)
chr7 (1-354)||(1300498-1300851)
chr7 (1-360)||(8658403-8658762)
chr7 (78-338)||(10495162-10495422)
chr7 (1-338)||(8666459-8666796)
chr7 (32-338)||(8653518-8653824)
chr7 (78-338)||(13334156-13334416)
chr7 (78-208)||(8671990-8672120)
chr7 (1-174)||(8653229-8653402)
chr7 (67-164)||(3146373-3146470)
chr7 (1-338)||(8586497-8586834)
[»] chr4 (1 HSPs)
chr4 (1-338)||(9336682-9337019)
[»] chr3 (2 HSPs)
chr3 (187-309)||(53416876-53416997)
chr3 (185-317)||(53417432-53417564)
[»] chr6 (2 HSPs)
chr6 (67-173)||(28910483-28910589)
chr6 (30-118)||(12488667-12488755)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 4679679 - 4679320
Alignment:
Q  1 ttattcttatcaagcaagttggtggccaccgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaag 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679679 ttattcttatcaagcaagttggtggccactgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaag 4679580  T
Q  101 cattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679579 cattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaat 4679480  T
Q  201 cagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679479 cagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagg 4679380  T
Q  301 gtgccatttgcatctatagcaaagcatacctccaagggtgtgtcacgaggagcatctgga 360  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4679379 gtgccatttgcatctatagcaaagcatacctccaagggtgtgccacgaggagcatctgga 4679320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 338
Target Start/End: Original strand, 29464921 - 29465229
Alignment:
Q  31 gtaattgcatcgttgatcttttcactttcatcacaaga-gagctttaaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattcc 129  Q
    |||||||||| ||||||||| |||||||| | |   || |||| | ||||||||| ||||||||||||| | |||||| ||||||||||||||| | ||     
T  29464921 gtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatct 29465020  T
Q  130 aatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacc 229  Q
    |||||||||||||| || ||||||||||  |||| | |||||||| |  | |||||||||||||||| ||||| ||||| || ||  || ||||  ||||    
T  29465021 aatgcactcattacattggccttccttacgaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgataacc 29465120  T
Q  230 tttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatac 329  Q
    |||||||  |||| || |||||||||   ||| ||||  | ||||| ||||| ||||||| |||||||||| |||||||| |||| || | |||||||||    
T  29465121 tttctttgccattagtaatggtgatcacattcatattgtcagtagatatttccttagcagtaacagttaggatgccattttcatcaatggaaaagcatac 29465220  T
Q  330 ctccaaggg 338  Q
    |||||||||    
T  29465221 ctccaaggg 29465229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 4 - 327
Target Start/End: Original strand, 15594081 - 15594404
Alignment:
Q  4 ttcttatcaagcaagttggtggccaccgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaagcat 103  Q
    |||||||||||||| || || ||||| ||||||||| | |||||||||  |  ||| | | ||||||| ||||| || |||||||| ||||| | |||||    
T  15594081 ttcttatcaagcaaatttgtagccactgtaattgcaccattgatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcat 15594180  T
Q  104 tcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaatcag 203  Q
    |  | |  |||||||||||    || |||||| |||||||||  ||||||||||  ||||||| ||||||  | ||||||| ||| ||||||| |||||     
T  15594181 ttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcat 15594280  T
Q  204 ttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtg 303  Q
    |||||||| || | ||| || |||||||||||| ||||||||||| ||||||| ||| ||||| || || ||  |||| ||  |||||||||| ||| |     
T  15594281 ttttttaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcaggata 15594380  T
Q  304 ccatttgcatctatagcaaagcat 327  Q
     ||||| |||| ||||||||||||    
T  15594381 gcattttcatcgatagcaaagcat 15594404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 29214652 - 29214509
Alignment:
Q  67 gagagctttaaattaacatccttctt-ctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttc 165  Q
    |||||||| ||||||||| || |||| |||||||| ||| || ||||||||||||||| | || ||||||||| ||||||| ||||||||||| |||| |    
T  29214652 gagagcttcaaattaacaaccgtctttctttaaagtatttttcatattgtaaacacaagaatctaatgcactcgttaccttggccttccttaagaattgc 29214553  T
Q  166 ttatcttcctcgcgatatttctcagcttcttcaatcagtttttt 209  Q
     |||||||| |  | |||||||||||||||| ||||| ||||||    
T  29214552 atatcttccacatggtatttctcagcttctttaatcaatttttt 29214509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 16658645 - 16658335
Alignment:
Q  1 ttattcttatcaagcaagttggtggccaccgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaag 100  Q
    |||||||||||||||||  | |||||||| |||||||||| ||||||||| ||| |||| | | | |||||||||||||| ||||| |||||   |||||    
T  16658645 ttattcttatcaagcaaacttgtggccacagtaattgcattgttgatcttctcaatttcttgagaggagagctttaaattcacatctttctt---taaag 16658549  T
Q  101 cattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaat 200  Q
    ||||||| ||||||||||||||| | ||||||||| |||||||||| |||||   ||||||||||||||||||| || | ||| ||||||||||||||||    
T  16658548 cattcttcatattgtaaacacaataatccaatgcattcattaccttggccttttgtaaaaatttcttatcttccacgtggtatctctcagcttcttcaat 16658449  T
Q  201 cagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagg 300  Q
    || |||||||| ||  || |||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||    
T  16658448 catttttttaatttccaaggttgacaatctttctttttcattggttatggtgatcttgtttgtatttcctgtagatacttccttagcagaaacagttagg 16658349  T
Q  301 gtgccatttgcatc 314  Q
     | |||||| ||||    
T  16658348 ataccattttcatc 16658335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 1300498 - 1300851
Alignment:
Q  1 ttattcttatcaagcaagttggtggccaccgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaag 100  Q
    |||||||||||||||||| | || |  || |||||||||| |||||||||||| ||||| | ||  ||||| |||||||||||||||||||||||||| |    
T  1300498 ttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaagg 1300597  T
Q  101 cattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaat 200  Q
    ||||||| |  |||||||||||| | |||||  || |||||||  | |||||| ||||||| ||||||||||||  | | ||||||||||| ||| ||||    
T  1300598 cattcttcactttgtaaacacaataatccaaatcattcattactgtggccttctttaaaaacttcttatcttccatgtggtatttctcagcatctgcaat 1300697  T
Q  201 cagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagg 300  Q
    || ||| |||| || |||||||| ||| ||||||||||||||| | ||||||||||  ||||||||||||||||| ||||| || |||||||| ||||      
T  1300698 cattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcctgtagatatttccttggcagaaactgttaaa 1300797  T
Q  301 gtgccatttgcatctatagcaaagcatacctccaagggtgtgtcacgaggagca 354  Q
     |||||||| ||| ||||| ||| |||||||||||||| ||| |||||||||||    
T  1300798 atgccattttcatttatagaaaaacatacctccaagggggtgccacgaggagca 1300851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 8658403 - 8658762
Alignment:
Q  1 ttattcttatcaagcaagttggtggccaccgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaag 100  Q
    ||||||| || ||||||||| || ||||  ||| |||||| |||||||||||| |||||  |||  ||||| |||||||||||||||||||| ||||| |    
T  8658403 ttattctcatgaagcaagtttgttgccaaggtagttgcattgttgatcttttccctttctccacgggagaggtttaaattaacatccttcttttttaacg 8658502  T
Q  101 cattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaat 200  Q
    ||||||| |  |||||||||||| | |||||  || ||||||| || |||||||||||||||| ||||||||||   || ||| ||||||||||||||||    
T  8658503 cattcttcactttgtaaacacaataatccaaatcattcattactttggccttccttaaaaattccttatcttccatacggtatctctcagcttcttcaat 8658602  T
Q  201 cagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagg 300  Q
    || ||| |||| || |||||||| ||| ||||||||||||||| |||||||||||| |||| ||||||||| ||| ||||| ||||| ||||| ||||      
T  8658603 cattttgttaatttcaaatgttgacaatctttctttttcattgtttatggtgatctggttcatatttcctgaagatatttccttagccgaaactgttaaa 8658702  T
Q  301 gtgccatttgcatctatagcaaagcatacctccaagggtgtgtcacgaggagcatctgga 360  Q
     |||||||| |||  || | ||| |||||||||||||| ||| ||||||||||| |||||    
T  8658703 atgccattttcattgattgaaaaacatacctccaagggagtgccacgaggagcacctgga 8658762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 78 - 338
Target Start/End: Complemental strand, 10495422 - 10495162
Alignment:
Q  78 attaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcg 177  Q
    |||||| ||||||||||||||||  ||||| ||||||||||||||| | || ||||||||||||||||| ||||||||||| |||||| |||||||  |     
T  10495422 attaacgtccttcttctttaaagtgttcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccttaagaatttcatatcttcgaca 10495323  T
Q  178 cgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagaca 277  Q
     | ||||||| |||||||| ||||| |||||||| ||  ||  ||| |||||||||||| ||||| || |||||||||  |||| |||| |||||||| |    
T  10495322 tggtatttcttagcttctttaatcatttttttaatttctaacattgacaacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagata 10495223  T
Q  278 tttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaaggg 338  Q
    | || ||||||| |||||| ||| |||||||| |||| || | ||||||||||||||||||    
T  10495222 tatccttagcagtaacagtcaggatgccattttcatcaatggaaaagcatacctccaaggg 10495162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 8666459 - 8666796
Alignment:
Q  1 ttattcttatcaagcaagttggtggccaccgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaag 100  Q
    ||||||||||||||||| |   | || || |||||||||| |||||||||| || |||| | |   |||||  | | |||||||||||||||||||||||    
T  8666459 ttattcttatcaagcaaatccatagcaacagtaattgcattgttgatctttgcaatttcttgaggggagagaatcagattaacatccttcttctttaaag 8666558  T
Q  101 cattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaat 200  Q
    | ||||| ||||||||||||||| | || ||| ||| ||||||||| ||| | |||||||||| | |||||||| |  | |||||||||||||||| |||    
T  8666559 ccttcttcatattgtaaacacaagaatctaattcacacattaccttggcccttcttaaaaattgcatatcttccacatggtatttctcagcttctttaat 8666658  T
Q  201 cagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagg 300  Q
    || ||||| ||  |  ||  ||| |||||||||||| |||||||||||||||||| ||||| |||| ||||| || |||||  |||||| |||||| |||    
T  8666659 cattttttcaatgtcgaacattgacaacctttctttgtcattggttatggtgatcatgttcatattgcctgtggatatttccctagcagtaacagtcagg 8666758  T
Q  301 gtgccatttgcatctatagcaaagcatacctccaaggg 338  Q
     | |||||| |||| || | ||||||||||||||||||    
T  8666759 ataccattttcatcaattgaaaagcatacctccaaggg 8666796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 32 - 338
Target Start/End: Original strand, 8653518 - 8653824
Alignment:
Q  32 taattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaa 131  Q
    ||||||||| ||||||||  |||||||| | |   |||||  ||| || |||||||||| | || |||||| |||| ||||||||||||||| | |||||    
T  8653518 taattgcattgttgatctgctcactttcttgaggggagaggattagatcaacatccttcatattcaaagcactctttatattgtaaacacaagaatccaa 8653617  T
Q  132 tgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctt 231  Q
    ||| || ||||| || |||||||| ||||||||| |||||||| | || |||||||||||||||||||||  ||||| || || |||  ||| |||||||    
T  8653618 tgcgcttattactttggccttcctcaaaaatttcatatcttccacacggtatttctcagcttcttcaatctttttttcaatttcaaactttgacaacctt 8653717  T
Q  232 tctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacct 331  Q
    ||||| ||||| || |||||||||| ||||  | |||| || |  || || ||| |||||||||||| | | |||||| |||| || | |||||||||||    
T  8653718 tctttctcattagtgatggtgatctcgttcagaattccagtggtgatatccttaccagaaacagttaagataccattttcatcaatggaaaagcatacct 8653817  T
Q  332 ccaaggg 338  Q
    |||||||    
T  8653818 ccaaggg 8653824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 338
Target Start/End: Complemental strand, 13334416 - 13334156
Alignment:
Q  78 attaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcg 177  Q
    |||||| || |||||||||||||  ||||| ||||||||||||||| | || |||||| |||||||||| ||||||||||| ||||||||||||||  |     
T  13334416 attaacgtctttcttctttaaagtgttcttcatattgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttcgaca 13334317  T
Q  178 cgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagaca 277  Q
     | |||| || |||||||| ||||| ||||| || ||  ||  |||  ||||||||||| ||||| || |||||||||  |||| |||| |||||||| |    
T  13334316 tggtattccttagcttctttaatcattttttcaatttctaacattgataacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagata 13334217  T
Q  278 tttctttagcagaaacagttagggtgccatttgcatctatagcaaagcatacctccaaggg 338  Q
    | || ||||||| ||| || ||| |||||||| |||| || | ||||||||||||||||||    
T  13334216 tatccttagcagtaaccgtcaggatgccattttcatcaatggaaaagcatacctccaaggg 13334156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 8672120 - 8671990
Alignment:
Q  78 attaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcg 177  Q
    ||||||||  ||||||| |||||| ||||| ||||||||||||||| | || ||||||| ||||||||| ||| | |||||||||| | |||||||| |     
T  8672120 attaacattgttcttctctaaagcgttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccaca 8672021  T
Q  178 cgatatttctcagcttcttcaatcagttttt 208  Q
     |||||||||||||||||| ||||| |||||    
T  8672020 tgatatttctcagcttctttaatcatttttt 8671990  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 8653229 - 8653402
Alignment:
Q  1 ttattcttatcaagcaagttggtggccaccgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaag 100  Q
    ||||||||||||||||| ||  ||||| |   |||||||| |||||||||||||||||| | |   ||||   ||| ||||||||||||| | || ||||    
T  8653229 ttattcttatcaagcaaattcatggccccaaaaattgcattgttgatcttttcactttcttgaggggagatgattagattaacatccttcgtattcaaag 8653328  T
Q  101 cattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcc 174  Q
    ||||| | ||||| | ||| ||| | |||||||||||||||||| | |||||||||||||||||| ||||||||    
T  8653329 cattcgttatattcttaacgcaagaatccaatgcactcattaccgtggccttccttaaaaatttcatatcttcc 8653402  T

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Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 3146373 - 3146470
Alignment:
Q  67 gagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaattt 164  Q
    ||||| |||| ||| ||||||||||||||||||||||| || || |||||||||||| | || |||||| ||||||| || |||||||||| ||||||    
T  3146373 gagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttccttagaaattt 3146470  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 8586834 - 8586497
Alignment:
Q  1 ttattcttatcaagcaagttggtggccaccgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaag 100  Q
    ||||||||||||||||| || || ||||  ||||||||||  |||||||||| |  ||  | | |||||  |||||  |||| |||||| ||||||| ||    
T  8586834 ttattcttatcaagcaaatttgtagccattgtaattgcatgattgatctttttaactttttgagaagagcactttagtttaatatccttattctttagag 8586735  T
Q  101 cattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaat 200  Q
    ||||| | |  ||||||||||||   || |||| | |||||||||||||||||||||  ||||||| ||| ||  || | ||   ||| ||||||| |||    
T  8586734 cattccttaacttgtaaacacaatcatctaatgaattcattaccttagccttccttaggaatttctgatcctcagcgaggtacacctctgcttcttgaat 8586635  T
Q  201 cagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagg 300  Q
    |||| |||||| || |   |  |  ||||||||||| ||||||||||| || || | ||| ||||| || |  || ||||| || |||||||||||||||    
T  8586634 cagtcttttaatttcatcagccgataacctttctttgtcattggttatcgttatttcgtttgtattgccagaggatatttccttcgcagaaacagttagg 8586535  T
Q  301 gtgccatttgcatctatagcaaagcatacctccaaggg 338  Q
     | |||||| |||| || |  ||||||||||| |||||    
T  8586534 ataccattttcatcgatggtgaagcatacctcaaaggg 8586497  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 9337019 - 9336682
Alignment:
Q  1 ttattcttatcaagcaagttggtggccaccgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaag 100  Q
    ||||||||||||||||| ||  | || || |||||||||| ||||||||| ||| |||| | |   | |||  | | ||||||||  |||||||||||||    
T  9337019 ttattcttatcaagcaaattcatagcaacagtaattgcattgttgatcttctcaatttcttgaggcgtgagaatcagattaacattgttcttctttaaag 9336920  T
Q  101 cattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaat 200  Q
    | ||||| ||||||||||||||| | || ||||||| ||||||||| ||| | |||||||||| | |||||||| |  |||||||| ||||||||| |||    
T  9336919 cgttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttcgcagcttctttaat 9336820  T
Q  201 cagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagg 300  Q
    || ||||| ||  |  ||  ||| |||||||||||| ||||| || ||||||||   |||| |||| |||||||| |||||  |||||| ||||||||||    
T  9336819 cattttttcaatgtcgaacattgacaacctttctttgtcattagtaatggtgattgcgttcatattgcctgtagatatttccctagcagtaacagttagg 9336720  T
Q  301 gtgccatttgcatctatagcaaagcatacctccaaggg 338  Q
     |||||||| |||| || | ||||||  ||||||||||    
T  9336719 atgccattttcatcaatcgaaaagcaggcctccaaggg 9336682  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 53416997 - 53416876
Alignment:
Q  187 tcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttag 286  Q
    |||||||||||||||| ||||| ||  | || ||||| |||||||||||| ||| |||||||||| |||| |||| |||||| | |||| ||||| ||||    
T  53416997 tcagcttcttcaatcattttttcaatatcaattgttgacaacctttctttgtcactggttatggt-atctagttcttatttcttctagatatttccttag 53416899  T
Q  287 cagaaacagttagggtgccattt 309  Q
    |||||||||||||| | ||||||    
T  53416898 cagaaacagttaggataccattt 53416876  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 185 - 317
Target Start/End: Original strand, 53417432 - 53417564
Alignment:
Q  185 tctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttcttt 284  Q
    |||||||||||||||| | ||||| || || || | ||| | ||||||| || | | ||||||||||||||| |||| |||||| | |||  ||||| ||    
T  53417432 tctcagcttcttcaattattttttcaatttcaattattgaccacctttccttgttaatggttatggtgatctcgttcttatttcttctagttatttcctt 53417531  T
Q  285 agcagaaacagttagggtgccatttgcatctat 317  Q
    ||||||||| |||||| | |||||| |||||||    
T  53417532 agcagaaacggttaggataccattttcatctat 53417564  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 28910483 - 28910589
Alignment:
Q  67 gagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttct 166  Q
    |||||||||| ||||  ||||||||| |||||| ||||||| || |||||||||||| | |  |||||| ||||||| || ||||| |||| |||||| |    
T  28910483 gagagctttagattagtatccttcttgtttaaatcattcttcatcttgtaaacacaataatgtaatgcattcattacattggcctttcttagaaattttt 28910582  T
Q  167 tatcttc 173  Q
     ||||||    
T  28910583 catcttc 28910589  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 12488755 - 12488667
Alignment:
Q  30 cgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaa 118  Q
    |||||| ||||  |||||||| ||| |||| | | | ||||||||||| |||||||||||| |||||| ||||||||| || |||||||    
T  12488755 cgtaatcgcatgattgatcttatcattttctttagatgagagctttaatttaacatccttcctctttagagcattcttcatcttgtaaa 12488667  T

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