View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7355_high_3 (Length: 415)

Name: NF7355_high_3
Description: NF7355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7355_high_3
NF7355_high_3
[»] chr2 (8 HSPs)
chr2 (19-145)||(43371606-43371733)
chr2 (44-125)||(42576667-42576746)
chr2 (56-127)||(18485727-18485798)
chr2 (23-121)||(38342452-38342551)
chr2 (67-125)||(39256370-39256428)
chr2 (77-121)||(30979055-30979099)
chr2 (78-128)||(24051531-24051581)
chr2 (80-128)||(13705262-13705310)
[»] chr7 (13 HSPs)
chr7 (19-124)||(22973445-22973551)
chr7 (38-125)||(43218360-43218446)
chr7 (77-125)||(28309615-28309663)
chr7 (77-125)||(27063469-27063517)
chr7 (19-101)||(18684031-18684114)
chr7 (20-74)||(31426066-31426121)
chr7 (19-128)||(32546249-32546362)
chr7 (79-125)||(16866306-16866352)
chr7 (79-125)||(27850242-27850288)
chr7 (19-72)||(44845117-44845171)
chr7 (77-127)||(42907947-42907999)
chr7 (79-127)||(26004394-26004442)
chr7 (77-125)||(27063273-27063321)
[»] scaffold0005 (1 HSPs)
scaffold0005 (19-123)||(211416-211521)
[»] chr4 (10 HSPs)
chr4 (19-123)||(14605857-14605962)
chr4 (56-125)||(11173057-11173126)
chr4 (58-125)||(21544665-21544732)
chr4 (56-125)||(24637265-24637334)
chr4 (67-128)||(30673087-30673148)
chr4 (56-125)||(31782697-31782766)
chr4 (77-125)||(31415842-31415890)
chr4 (77-125)||(45065385-45065433)
chr4 (77-116)||(15733446-15733485)
chr4 (77-126)||(41914906-41914955)
[»] chr5 (6 HSPs)
chr5 (19-127)||(12251022-12251131)
chr5 (67-125)||(2681336-2681394)
chr5 (19-74)||(23044972-23045028)
chr5 (79-125)||(4583251-4583297)
chr5 (20-73)||(18116499-18116553)
chr5 (20-73)||(43523801-43523855)
[»] chr6 (4 HSPs)
chr6 (19-125)||(9458910-9459017)
chr6 (77-124)||(17546814-17546861)
chr6 (77-127)||(29199805-29199855)
chr6 (77-126)||(18909023-18909072)
[»] chr1 (4 HSPs)
chr1 (56-125)||(17516443-17516512)
chr1 (79-125)||(24236671-24236717)
chr1 (60-125)||(35069800-35069864)
chr1 (77-125)||(19003576-19003624)
[»] chr8 (4 HSPs)
chr8 (77-125)||(11880727-11880775)
chr8 (77-125)||(11898143-11898191)
chr8 (77-126)||(15068497-15068546)
chr8 (19-72)||(6388498-6388552)
[»] chr3 (2 HSPs)
chr3 (19-125)||(2490357-2490464)
chr3 (78-127)||(40796066-40796115)
[»] scaffold0184 (1 HSPs)
scaffold0184 (19-94)||(3021-3097)
[»] scaffold0015 (1 HSPs)
scaffold0015 (38-126)||(55826-55914)
[»] scaffold0008 (2 HSPs)
scaffold0008 (77-125)||(67879-67927)
scaffold0008 (77-125)||(75722-75770)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 43371606 - 43371733
Alignment:
Q  19 gtacccgtattctaaaatcggg-aaaacccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgc 117  Q
    ||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  43371606 gtacccgtattttaaaatcggggaaaactcaaaccaatacccaaactcagtcaaattagggttggtttgggcggatatccatggacatgagttttgttgc 43371705  T
Q  118 catgcctactcctagtcttacaccaatg 145  Q
    ||||||||||||||||||| ||||||||    
T  43371706 catgcctactcctagtcttccaccaatg 43371733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 42576667 - 42576746
Alignment:
Q  44 acccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    ||||||||| |||||||||| || ||||||   |||||||||||||||||||||  || |||| ||||||||||||||||||    
T  42576667 acccaaacccatacccaaacccaatcaaatcggggttggtttgggcgggtatcc--gggcatgggttttgttgccatgccta 42576746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 18485727 - 18485798
Alignment:
Q  56 acccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgcctact 127  Q
    |||||||| |||||||||   |||||||||||||||||| |||||| || |  |||||||||||||||||||    
T  18485727 acccaaacccagtcaaatcggggttggtttgggcgggtacccatgggcacggattttgttgccatgcctact 18485798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 38342551 - 38342452
Alignment:
Q  23 ccgtattctaaaatcggg-aaaacccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatg 121  Q
    ||||||| |||||||||| ||||| |||||| ||| |||||| || |||||||  ||||||||||||| |||| |||||| || | | ||||||||||||    
T  38342551 ccgtattttaaaatcggggaaaactcaaacccatatccaaacccaatcaaattggggttggtttgggcaggtacccatgggcacgggatttgttgccatg 38342452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 39256428 - 39256370
Alignment:
Q  67 gtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    ||||||||  |||||||||||||||||| |||||| || | ||||||||||||||||||    
T  39256428 gtcaaattggggttggtttgggcgggtacccatgggcacgggttttgttgccatgccta 39256370  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 30979055 - 30979099
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatg 121  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||||    
T  30979055 ggttgatttgggcgggtacccatggacatgggttttgttgccatg 30979099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 24051581 - 24051531
Alignment:
Q  78 gttggtttgggcgggtatccatggacatgagttttgttgccatgcctactc 128  Q
    |||| ||||||| |||| |||||||||||  ||||||||||||||||||||    
T  24051581 gttgatttgggcaggtacccatggacatggattttgttgccatgcctactc 24051531  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 13705310 - 13705262
Alignment:
Q  80 tggtttgggcgggtatccatggacatgagttttgttgccatgcctactc 128  Q
    ||||| || |||||| ||||||  |||||||||||||||||||||||||    
T  13705310 tggttcggacgggtaaccatgggtatgagttttgttgccatgcctactc 13705262  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 22973445 - 22973551
Alignment:
Q  19 gtacccgtattctaaaatcg-ggaaaacccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgc 117  Q
    ||||||||||| | |||||| |||||||||||||| |||||||||| |||||||||   ||||||||||| |||||| |||||| |||| ||||||||||    
T  22973445 gtacccgtattttgaaatcgtggaaaacccaaacccatacccaaacccagtcaaatcggggttggtttggacgggtacccatgggcatgggttttgttgc 22973544  T
Q  118 catgcct 124  Q
    |||||||    
T  22973545 catgcct 22973551  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 43218360 - 43218446
Alignment:
Q  38 gggaaaacccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    ||||||||||||||| |||||||||| |||||||||   ||||||||||||| |||| |||||| || | ||||| ||||||||||||    
T  43218360 gggaaaacccaaacccatacccaaacccagtcaaatcggggttggtttgggc-ggtacccatgggcacgggtttttttgccatgccta 43218446  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 28309615 - 28309663
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  28309615 ggttggtttgggcggatatccatggacacgggttttgttgccatgccta 28309663  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 27063469 - 27063517
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    ||||||||||||||| ||||||||| || | ||||||||||||||||||    
T  27063469 ggttggtttgggcggttatccatgggcacgggttttgttgccatgccta 27063517  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 18684031 - 18684114
Alignment:
Q  19 gtacccgtattctaaaatcggg-aaaacccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggtatccatgg 101  Q
    ||||||||||| | |||||||| ||||||| |||| ||||||||||  ||||||||   |||||||||||| ||||| ||||||    
T  18684031 gtacccgtattttgaaatcggggaaaacccgaacccatacccaaacctagtcaaatcggggttggtttgggtgggtacccatgg 18684114  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 31426066 - 31426121
Alignment:
Q  20 tacccgtattctaaaatcggg-aaaacccaaaccaatacccaaactcagtcaaatt 74  Q
    |||||||||| | |||||||| |||||||||||||||||| |||| ||||||||||    
T  31426066 tacccgtatttttaaatcggggaaaacccaaaccaataccaaaacccagtcaaatt 31426121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 32546249 - 32546362
Alignment:
Q  19 gtacccgtattctaaaatcgggaaaac-ccaaaccaatac---ccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgt 114  Q
    ||||||||||| | ||||||||||||  ||||||| ||||   |||||| |||||||||   ||||||||||||  |||| |||||| || ||||||  |    
T  32546249 gtacccgtattttgaaatcgggaaaaatccaaacccatacgccccaaacccagtcaaatcggggttggtttgggtaggtacccatgggcacgagtttcat 32546348  T
Q  115 tgccatgcctactc 128  Q
    ||||||||||||||    
T  32546349 tgccatgcctactc 32546362  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 16866306 - 16866352
Alignment:
Q  79 ttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    |||||| ||||||||| ||| ||| ||||||||||||||||||||||    
T  16866306 ttggttcgggcgggtaaccacggatatgagttttgttgccatgccta 16866352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 27850288 - 27850242
Alignment:
Q  79 ttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    |||||| ||||||||| ||| ||| ||||||||||||||||||||||    
T  27850288 ttggttcgggcgggtaaccacggatatgagttttgttgccatgccta 27850242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 44845171 - 44845117
Alignment:
Q  19 gtacccgtattctaaaatcggg-aaaacccaaaccaatacccaaactcagtcaaa 72  Q
    ||||||||||| | |||||||| |||||||||||| ||||| |||||||||||||    
T  44845171 gtacccgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 44845117  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 42907999 - 42907947
Alignment:
Q  77 ggttggtttgggcggg--tatccatggacatgagttttgttgccatgcctact 127  Q
    ||||||||||||||||  || ||||||||||| ||||| ||||||||||||||    
T  42907999 ggttggtttgggcgggggtacccatggacatgggttttattgccatgcctact 42907947  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 26004442 - 26004394
Alignment:
Q  79 ttggtttgggcgggtatccatggacatgagttttgttgccatgcctact 127  Q
    |||||| ||||||||| ||| ||  ||||||||||||||||||||||||    
T  26004442 ttggttcgggcgggtaaccacgggtatgagttttgttgccatgcctact 26004394  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 27063273 - 27063321
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    |||||||||||| ||||| |||||| || ||||||||||| ||||||||    
T  27063273 ggttggtttgggagggtacccatgggcacgagttttgttgtcatgccta 27063321  T

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Target: scaffold0005 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 211416 - 211521
Alignment:
Q  19 gtacccgtattctaaaatcgg-gaaaacccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgc 117  Q
    ||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||||    ||||||||||||| | | ||||||  ||| ||||||||||    
T  211416 gtacccgtattttgaaatcggagaaaacccaaacccatacccaaactcagtcaaatcggagttggtttgggcgagcacccatgggtatgggttttgttgc 211515  T
Q  118 catgcc 123  Q
    ||||||    
T  211516 catgcc 211521  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 14605962 - 14605857
Alignment:
Q  19 gtacccgtattctaaaatcgg-gaaaacccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgc 117  Q
    ||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||||    ||||||||||||| | | ||||||  ||| ||||||||||    
T  14605962 gtacccgtattttgaaatcggagaaaacccaaacccatacccaaactcagtcaaatcggagttggtttgggcgagcacccatgggtatgggttttgttgc 14605863  T
Q  118 catgcc 123  Q
    ||||||    
T  14605862 catgcc 14605857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 11173057 - 11173126
Alignment:
Q  56 acccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    |||||||| |||||||||   |||||||||||||||||| ||||   |||||||||||||||||||||||    
T  11173057 acccaaacccagtcaaatcggggttggtttgggcgggtacccatatgcatgagttttgttgccatgccta 11173126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 21544665 - 21544732
Alignment:
Q  58 ccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    |||||| || |||||| | |||||||||||||||||| |||||| |||| ||||||||| ||||||||    
T  21544665 ccaaacccaatcaaatcatggttggtttgggcgggtacccatgggcatgggttttgttgtcatgccta 21544732  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 24637265 - 24637334
Alignment:
Q  56 acccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    |||||||| ||||||||| | |||||||||||||||||| |||||| || | |||| | |||||||||||    
T  24637265 acccaaacccagtcaaatcagggttggtttgggcgggtacccatgggcacgggtttcgatgccatgccta 24637334  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 30673087 - 30673148
Alignment:
Q  67 gtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgcctactc 128  Q
    ||||||||  ||||||||||| ||| || ||||||||||| ||||||||| |||||||||||    
T  30673087 gtcaaattgtggttggtttggacggatacccatggacatgggttttgttgtcatgcctactc 30673148  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 31782697 - 31782766
Alignment:
Q  56 acccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    |||||||| |||||||||   |||||||||||||||||| |||||| || |  |||||||||||||||||    
T  31782697 acccaaacccagtcaaatcgaggttggtttgggcgggtacccatgggcacggattttgttgccatgccta 31782766  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 31415890 - 31415842
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    ||||| |||||||||||| ||||||||||| |||| |||||||||||||    
T  31415890 ggttgatttgggcgggtacccatggacatgggtttcgttgccatgccta 31415842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 45065385 - 45065433
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    |||||||||||||||||| |||||| || | ||||||||||||||||||    
T  45065385 ggttggtttgggcgggtacccatgggcacgggttttgttgccatgccta 45065433  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 15733485 - 15733446
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttg 116  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  15733485 ggttggtttgggcgggtatccatgggcacgagttttgttg 15733446  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 41914955 - 41914906
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgcctac 126  Q
    ||||||||||||||| || |||||| |||| ||||||||| |||||||||    
T  41914955 ggttggtttgggcggttacccatgggcatgggttttgttgtcatgcctac 41914906  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 12251022 - 12251131
Alignment:
Q  19 gtacccgtattctaaaatcgggaaaac-ccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgc 117  Q
    ||||||||||| | |||||| |||||  |||| || |||||| |||  ||||||||   |||||||||||| ||||| |||||| |||||||||||||||    
T  12251022 gtacccgtattttgaaatcgtgaaaaatccaagcccatacccgaacctagtcaaatcggggttggtttgggtgggtacccatgggcatgagttttgttgc 12251121  T
Q  118 catgcctact 127  Q
    ||||||||||    
T  12251122 catgcctact 12251131  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 2681336 - 2681394
Alignment:
Q  67 gtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    ||||||||  ||||||||||| |||||| |||||| || ||||||||||||||||||||    
T  2681336 gtcaaattgaggttggtttggacgggtacccatgggcacgagttttgttgccatgccta 2681394  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 23045028 - 23044972
Alignment:
Q  19 gtacccgtattctaaaatcggg-aaaacccaaaccaatacccaaactcagtcaaatt 74  Q
    ||||||||||| | |||||||| |||||| ||||| |||||||||||||||||||||    
T  23045028 gtacccgtattttgaaatcggggaaaacctaaacccatacccaaactcagtcaaatt 23044972  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 4583251 - 4583297
Alignment:
Q  79 ttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    |||||| ||||||||| || |||| ||||||||||||||||||||||    
T  4583251 ttggttcgggcgggtaaccgtggatatgagttttgttgccatgccta 4583297  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 18116553 - 18116499
Alignment:
Q  20 tacccgtattctaaaatcgg-gaaaacccaaaccaatacccaaactcagtcaaat 73  Q
    |||||||||| | ||||||| ||||||||||||  ||||||||||||||||||||    
T  18116553 tacccgtattttgaaatcggagaaaacccaaactcatacccaaactcagtcaaat 18116499  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 43523801 - 43523855
Alignment:
Q  20 tacccgtattctaaaatcggg-aaaacccaaaccaatacccaaactcagtcaaat 73  Q
    |||||||||| | |||||||| |||||||||||  ||||||||||||||||||||    
T  43523801 tacccgtattttgaaatcggggaaaacccaaactcatacccaaactcagtcaaat 43523855  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 9458910 - 9459017
Alignment:
Q  19 gtacccgtattctaaaatcggg-aaaacccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgc 117  Q
    ||||||||||| | |||||||| |||||||| ||| |||||||||| |||||||||   ||||||||||||||| |||||||   || | |||||||||     
T  9458910 gtacccgtattattaaatcggggaaaacccagacccatacccaaacccagtcaaatcggggttggtttgggcggttatccataagcacgggttttgttgt 9459009  T
Q  118 catgccta 125  Q
    ||||||||    
T  9459010 catgccta 9459017  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 17546861 - 17546814
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgcct 124  Q
    ||||||||||||| |||| |||| |||||| |||||||||||||||||    
T  17546861 ggttggtttgggcaggtacccatagacatgggttttgttgccatgcct 17546814  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 29199855 - 29199805
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgcctact 127  Q
    |||||||||||||||||| | |||| ||||  |||||||||||||||||||    
T  29199855 ggttggtttgggcgggtacctatgggcatggattttgttgccatgcctact 29199805  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 18909023 - 18909072
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgcctac 126  Q
    |||||||||||||||||| | |||| || | |||||||||||||||||||    
T  18909023 ggttggtttgggcgggtacctatgggcacgggttttgttgccatgcctac 18909072  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 17516443 - 17516512
Alignment:
Q  56 acccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    |||||||| |||||||||   ||||||||||| |||||| ||||||||||  ||||||||||||||||||    
T  17516443 acccaaacccagtcaaatcggggttggtttggacgggtacccatggacataggttttgttgccatgccta 17516512  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 24236717 - 24236671
Alignment:
Q  79 ttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    |||||| ||||||||| ||||||  ||||||||||||||||||||||    
T  24236717 ttggttcgggcgggtaaccatgggtatgagttttgttgccatgccta 24236671  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 35069864 - 35069800
Alignment:
Q  60 aaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    |||||| |||||||   ||||||||||||||| ||||||||||||||  ||||||| |||||||||    
T  35069864 aaactccgtcaaatcggggttggtttgggcgg-tatccatggacatggattttgttaccatgccta 35069800  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 19003624 - 19003576
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    ||||| |||||||||||| |||||| || | ||||||||||||||||||    
T  19003624 ggttgctttgggcgggtacccatgggcacgggttttgttgccatgccta 19003576  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 11880775 - 11880727
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  11880775 ggttggtttgggcgggtatccgtggacatggattttgttgccatgccta 11880727  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 11898191 - 11898143
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  11898191 ggttggtttgggcgggtatccgtggacatggattttgttgccatgccta 11898143  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 15068546 - 15068497
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgcctac 126  Q
    |||||||||||||||||| |||||| || | |||||||||||||||||||    
T  15068546 ggttggtttgggcgggtacccatgggcacgggttttgttgccatgcctac 15068497  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 6388552 - 6388498
Alignment:
Q  19 gtacccgtattctaaaatcgggaaa-acccaaaccaatacccaaactcagtcaaa 72  Q
    |||||||| || |||||||||| || ||||||||| |||||||||||||||||||    
T  6388552 gtacccgtgttttaaaatcggggaagacccaaacccatacccaaactcagtcaaa 6388498  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 2490357 - 2490464
Alignment:
Q  19 gtacccgtattctaaaatcggg-aaaacccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgc 117  Q
    ||||||||||| | |||||||| ||||| |||||| ||| |||||| |||||||||    |||||||||||||| || |||||   ||||||||||||||    
T  2490357 gtacccgtattttgaaatcggggaaaactcaaacccatatccaaacccagtcaaatcggagttggtttgggcggatacccatgagtatgagttttgttgc 2490456  T
Q  118 catgccta 125  Q
    ||| ||||    
T  2490457 cataccta 2490464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 40796115 - 40796066
Alignment:
Q  78 gttggtttgggcgggtatccatggacatgagttttgttgccatgcctact 127  Q
    |||||||||| || |||||||| | |||||||||||||||||| ||||||    
T  40796115 gttggtttggacgagtatccataggcatgagttttgttgccatacctact 40796066  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 3021 - 3097
Alignment:
Q  19 gtacccgtattctaaaatcggg-aaaacccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggta 94  Q
    ||||||||||| | |||||||| |||||||||||  |||||||||| |||||||||    |||||||||||||||||    
T  3021 gtacccgtattttgaaatcggggaaaacccaaactcatacccaaacccagtcaaatcggagttggtttgggcgggta 3097  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 55914 - 55826
Alignment:
Q  38 gggaaaacccaaaccaatacccaaactcagtcaaattacggttggtttgggcgggtatccatggacatgagttttgttgccatgcctac 126  Q
    ||||||||||||| | |||||| ||||||||| |||    |||||||| | |||||| |||||| || | |||||||||||||||||||    
T  55914 gggaaaacccaaatccataccccaactcagtccaatcggagttggtttcgacgggtacccatgggcacgggttttgttgccatgcctac 55826  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 67879 - 67927
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    ||||||||||||||||||  ||||| || | ||||||||||||||||||    
T  67879 ggttggtttgggcgggtactcatgggcacgggttttgttgccatgccta 67927  T

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Target: scaffold0008; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 75722 - 75770
Alignment:
Q  77 ggttggtttgggcgggtatccatggacatgagttttgttgccatgccta 125  Q
    ||||||||||||||||||  ||||| || | ||||||||||||||||||    
T  75722 ggttggtttgggcgggtactcatgggcacgggttttgttgccatgccta 75770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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