View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7355_high_6 (Length: 295)
Name: NF7355_high_6
Description: NF7355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7355_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 30576356 - 30576620
Alignment:
| Q |
13 |
aatattgttgtgtgaccttgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaagagaactctcttccaagggttt |
112 |
Q |
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| T |
30576356 |
aatattgttgtgtgaccttgttaggaacgaagatattgaattgaataaaaagaacatttctgttaagaaaataggaaagagaactctcttccaagggttt |
30576455 |
T |
|
| Q |
113 |
ccctatcgacaacagagccactgatctattcacagaatattaacaaatctcaattcctccctatccttccattctcctatttatacacgcaactcaataa |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30576456 |
ccctatcgacaacagaaccactgatctattcacagaatattaacaaatctcaattcctccctatacttccattctcctatttatacacgcaactcaataa |
30576555 |
T |
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| Q |
213 |
ttaatcaattaagtaactcctccttatactataatgttacttacttcttacctttagtcctaaca |
277 |
Q |
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| T |
30576556 |
ctaatcaattaagtaactcctccttatactataatgttacttacttcttacctttaatcctaaca |
30576620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 38760569 - 38760503
Alignment:
| Q |
173 |
ctatccttccattctcctatttatacacgcaactcaataattaatcaattaagtaactcctccttat |
239 |
Q |
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| T |
38760569 |
ctatccttctattctcctatttatacatgctactctataactaatcaattaactaactcctctttat |
38760503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 21524287 - 21524226
Alignment:
| Q |
31 |
tgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaaga |
92 |
Q |
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| T |
21524287 |
tgttaggaaccaagaatttgtattcaatagaaagaacacatttattaagaaaataggaaaga |
21524226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 21534847 - 21534786
Alignment:
| Q |
31 |
tgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaaga |
92 |
Q |
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|||||||||||||||| ||| ||| |||| |||||||| | | |||||||||||||||||| |
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| T |
21534847 |
tgttaggaaccaagaatttgtattcaatagaaagaacacatttattaagaaaataggaaaga |
21534786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 20642045 - 20642106
Alignment:
| Q |
31 |
tgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaaga |
92 |
Q |
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|||||||||||||||| ||| ||| |||| |||||| | || | |||||||||||||||||| |
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| T |
20642045 |
tgttaggaaccaagaatttgtattcaatagaaagaaaacttttattaagaaaataggaaaga |
20642106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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