View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7355_high_8 (Length: 256)
Name: NF7355_high_8
Description: NF7355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7355_high_8 |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 33391270 - 33391024
Alignment:
| Q |
7 |
tacattattctgcataaaagaaccctctatcaataaacatgagtgtctaaagtggcttgacacaaaagatatcaactcatcaattgtttatgtgtgcttt |
106 |
Q |
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| T |
33391270 |
tacatcatactgcagaaaagaaccctctatcaataaacatgagtgtctaaagtggcttgacacaaaagatatcaactca---attgtttatgtgtgcttt |
33391174 |
T |
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| Q |
107 |
ggaagtaaaaatcactttcttaactctcagcttaaagaaattgctatgggactcgaagcatcggggaaagattttgtttgggtggtgaagaaaaatgcag |
206 |
Q |
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| T |
33391173 |
ggaagtaaaaatcacttccttaactctcagcttaaagaaattgctatgggactcgaagcatcggggaaagattttgtttgggtggtgaagaaaaatgcag |
33391074 |
T |
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| Q |
207 |
aagatagagaaattaaaggtcttctagaatttgagaaaagaatgaaagga |
256 |
Q |
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| T |
33391073 |
aagatagagaaattaaaggtcttctagaatttgagaaaagaatgaaagga |
33391024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 33382902 - 33382968
Alignment:
| Q |
128 |
aactctcagcttaaagaaattgctatgggactcgaagcatcggggaaagattttgtttgggtggtga |
194 |
Q |
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| T |
33382902 |
aactctcagcttaaagaaattgctacgggacttgaagcatccgggcaattttttatttgggtggtga |
33382968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 18989249 - 18989477
Alignment:
| Q |
22 |
aaaagaaccctctatcaataaacatgagtgtctaaagtggcttgacacaaaagatatcaactcatcaattgtttatgtgtgctttggaagtaaaaatcac |
121 |
Q |
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| T |
18989249 |
aaaagaaccctctatcaataaacacaagtgtctaaagtggcttgacacaaaagatatcaacttag---ttgtttatgtgtgctttggaagtacaaatcac |
18989345 |
T |
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| Q |
122 |
tttcttaactctcagcttaaagaaattgctatgggactcgaagcatcggggaaagattttgtttgggtggtgaagaaaaatgcagaagatagagaaatta |
221 |
Q |
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| T |
18989346 |
ttccttaactctcagcttaaagaaatttctatgggactcaaagcatcgtggaaagatttagttttggtggtgaagaaaaagagagaagatagagaa---a |
18989442 |
T |
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| Q |
222 |
aaggtcttctagaatttgagaaaagaatgaaagga |
256 |
Q |
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| T |
18989443 |
aaggtctaccagaatttgagaaaataatgaaagga |
18989477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 19001683 - 19001911
Alignment:
| Q |
22 |
aaaagaaccctctatcaataaacatgagtgtctaaagtggcttgacacaaaagatatcaactcatcaattgtttatgtgtgctttggaagtaaaaatcac |
121 |
Q |
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| T |
19001683 |
aaaagaaccctctatcaataaacatgagtgtctaaagtggcttgacacaa--gatatcaactcag---ttgtttatgtgttctttggaagtacaaatcac |
19001777 |
T |
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| Q |
122 |
tttcttaactctcagcttaaagaaattgctatgggactcgaagcatcggggaaagattttgtttgggtggtgaagaaaaatgcagaagatagagaaatta |
221 |
Q |
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| T |
19001778 |
ttccttaactctcagattaaagaaattgatatgggactcaaagcatcggggaaagattttgtttgggtggtgaagaaaaagagagaagatatagaga-aa |
19001876 |
T |
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| Q |
222 |
aaggtcttctagaatttgagaaaagaatgaaagga |
256 |
Q |
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| T |
19001877 |
aaggactaccagaatttgagaaaaggatgaaagga |
19001911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 27689003 - 27688853
Alignment:
| Q |
41 |
aaacatgagtgtctaaagtggcttgacacaaaagatatcaactcatcaattgtttatgtgtgctttggaagtaaaaatcactttcttaactctcagctta |
140 |
Q |
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| T |
27689003 |
aaacacgagtgtctaaagtggcttgacacaaaaaatatcaactcag---ttgtttacatgtgttttggaagtatgacacacttccttaactctcagctta |
27688907 |
T |
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| Q |
141 |
aagaaattgctatgggactcgaagcatcggggaaagattttgtttgggtggtga |
194 |
Q |
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| T |
27688906 |
aggaaattgctatgggactcgaagcatcagggcataattttatttgggttgtga |
27688853 |
T |
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