View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7355_low_1 (Length: 525)
Name: NF7355_low_1
Description: NF7355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7355_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 11297497 - 11297994
Alignment:
| Q |
18 |
ataataactctcggttaacgtaatgtgtcaaactcgacaaattaatgataacagattcatttataaatcacaaatcaacacttctaagaacaaactccaa |
117 |
Q |
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| T |
11297497 |
ataataactctcggttagcgtaatgtatcaaactcgacaaattaatgataacagattcatttataaatcacaaatcaacacttc-aagaacaaactccaa |
11297595 |
T |
|
| Q |
118 |
ctagtaatatagcatacgagttacgtcaacctaaattgtcaaaatcacattaacatagtaatttgtctatgattgccaatgtttcgaatgctatggtaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11297596 |
ctagtaatatagcatacgagttacgtcaacctaaattgccaaaatcacattaacatagtaatttgtctatgattgccaatgtttcgaatgctatggtaat |
11297695 |
T |
|
| Q |
218 |
gctaatgttttcttatcgatcataaatttcttagcgtgaacacaatcattaataatcacattaattaagtgcaattttgtcttcaacttaatttgtttta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11297696 |
gctaatgttttcttatcgatcataaatttcttagcgtgaacacaatcattaattatcacattaattaagtgcaattttgtctacaacttaatttgtttta |
11297795 |
T |
|
| Q |
318 |
gcctataaaaactgttcctatggatgagcataagcataattaactacattgtc---atggccagcagcaaagtagttaatcttttctcaattgtcttgct |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11297796 |
gcctataaaaactgttcctatggatgagcataagcataattaactacattgtcaatatggccagcagcaaagtagttaatcttttatcaattgtcttgct |
11297895 |
T |
|
| Q |
415 |
ttgcattacaatagtacaaggaagaaaaacacttaacactagcattgaattttcaccatcgtctctagttaacaatgatgatggtgtctgcaagagtat |
513 |
Q |
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| T |
11297896 |
ttgcattacaatagtacaaggaagaaaaacacttaacactagcattgaattttcaccatcgtctctagttaacaatgatgatggtgtctgcaagagtat |
11297994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 278 - 513
Target Start/End: Original strand, 11292399 - 11292641
Alignment:
| Q |
278 |
ttaattaagtgcaattttgtcttcaacttaatt----tgttttagcctataaaaactgttcctatggatgagcataagcataattaactacattgtca-- |
371 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
11292399 |
ttaattaaatgcaattttgtcttcaacttaattaatttgttttagcctataaaaactgttcctatggatgagcataaacataattaaccacattgtcaat |
11292498 |
T |
|
| Q |
372 |
-tggccagcagcaaagtagttaatcttttctcaattgtcttgctttgcattacaatagtacaaggaagaaaaacacttaacactagcattgaattttcac |
470 |
Q |
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| T |
11292499 |
atggccaggaggaaagtagttaatcttttctcaattgtcatgctttgcattacaatagtacaaggaagaaaaaccataaacactagtaatgaattttcag |
11292598 |
T |
|
| Q |
471 |
catcgtctctagttaacaatgatgatggtgtctgcaagagtat |
513 |
Q |
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| T |
11292599 |
catcgtctctagataacaatgacgatggtatctgcaagagtat |
11292641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 11292093 - 11292227
Alignment:
| Q |
28 |
tcggttaacgtaatgtgtcaaactcgacaaa-ttaatgataacagattcatttataaatcacaaatcaacacttctaagaacaaactccaactagtaata |
126 |
Q |
| |
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||||||| ||||||| |||||||| ||||| |||||| ||||| ||||| ||||||||||||| | |||||||| |||||||||||||||||||||| | |
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| T |
11292093 |
tcggttagtgtaatgtctcaaactcaacaaaattaatgttaacaaattcaattataaatcacaatttaacacttc-aagaacaaactccaactagtaaga |
11292191 |
T |
|
| Q |
127 |
tagcatacgagttacgtcaacctaaattgtcaaaat |
162 |
Q |
| |
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|||| || |||||||||||| | |||||| |||||| |
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| T |
11292192 |
tagcctaggagttacgtcaatccaaattgccaaaat |
11292227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 11292258 - 11292374
Alignment:
| Q |
160 |
aatcacattaacatagtaatttgtctatgattgccaatgtttcgaatgctatggtaatgctaatgttttcttatcgatcataaatttcttagcgtgaaca |
259 |
Q |
| |
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|||||||||||| |||||||||| ||| || || | |||||||||| ||| |||||| |||||||| |||| ||||||||||||||||||||||||| |
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| T |
11292258 |
aatcacattaacttagtaatttgcctaagaatgtcgatgtttcgaacgctcaggtaatctcaatgttttgttattgatcataaatttcttagcgtgaaca |
11292357 |
T |
|
| Q |
260 |
caatcattaataatcac |
276 |
Q |
| |
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||| |||||||||||| |
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| T |
11292358 |
caactattaataatcac |
11292374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 371 - 513
Target Start/End: Original strand, 30909459 - 30909601
Alignment:
| Q |
371 |
atggccagcagcaaagtagttaatcttttctcaattgtcttgctttgcattacaatagtacaaggaagaaaaacacttaacactagcattgaattttcac |
470 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||| |||||||||||| || |||||||||| |
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| T |
30909459 |
atggccagcagcagagtagttggtcttttctcaatagtcttgatttgcattacaatagcacaaggaagaaaagcacttaacactaacaatgaattttcag |
30909558 |
T |
|
| Q |
471 |
catcgtctctagttaacaatgatgatggtgtctgcaagagtat |
513 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||| ||||| |
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| T |
30909559 |
catcgtctctagttaacaacgatgatggcatctgcaaaagtat |
30909601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 496
Target Start/End: Original strand, 30902969 - 30903122
Alignment:
| Q |
346 |
cataagcataattaactacattgtca---tggccagcagcaaagtagttaatcttttctcaattgtcttgctttgcattacaatagtacaaggaagaaaa |
442 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||||||| | | |||||| ||| ||||||| |||||| ||||||||||| ||| ||||||||||||| |
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| T |
30902969 |
cataagcaaaattaaccacattgtcaacatggccagcacaatactagttagtctaatctcaatagtcttgttttgcattacagtagcacaaggaagaaaa |
30903068 |
T |
|
| Q |
443 |
acacttaacactagcattgaattttcaccatcgtctctagttaacaatgatgat |
496 |
Q |
| |
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|||||| |||| | || |||| ||||| |||| |||||||||| | |||||||| |
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| T |
30903069 |
acacttcacacaaccaatgaaatttcagcatcctctctagttaccgatgatgat |
30903122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 30909041 - 30909147
Alignment:
| Q |
56 |
aaattaatgataacagattcatttataaatcacaaatcaacacttctaagaacaaactccaactagtaatatagcatacgagttacgtcaacctaaattg |
155 |
Q |
| |
|
||||||||| | ||| |||||||||||||||||||||||||||||| | || |||| |||||||||| ||| | || |||||||||||||| |||||| |
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|
| T |
30909041 |
aaattaatgttgacacattcatttataaatcacaaatcaacacttcaagaaaaaaaccacaactagtaagataacctaggagttacgtcaacccaaattg |
30909140 |
T |
|
| Q |
156 |
tcaaaat |
162 |
Q |
| |
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|||||| |
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|
| T |
30909141 |
ccaaaat |
30909147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 30909188 - 30909246
Alignment:
| Q |
160 |
aatcacattaacatagtaatttgtctatgattgccaatgtttcgaatgctatggtaatg |
218 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||||||||||| ||| ||||||| |
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|
| T |
30909188 |
aatcacattaacatagtaatttacctatgaatgtcaatgtttcgaacgctcaggtaatg |
30909246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 453
Target Start/End: Complemental strand, 36706423 - 36706364
Alignment:
| Q |
394 |
tcttttctcaattgtcttgctttgcattacaatagtacaaggaagaaaaacacttaacac |
453 |
Q |
| |
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|||| ||||| | ||||||||||||||||||| | ||||||||||||||||||| |||| |
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|
| T |
36706423 |
tcttatctcattagtcttgctttgcattacaacaacacaaggaagaaaaacactttacac |
36706364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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