View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7355_low_10 (Length: 269)

Name: NF7355_low_10
Description: NF7355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7355_low_10
NF7355_low_10
[»] chr3 (3 HSPs)
chr3 (18-261)||(5381378-5381621)
chr3 (18-261)||(13721145-13721388)
chr3 (101-180)||(24341603-24341682)
[»] scaffold0015 (1 HSPs)
scaffold0015 (18-261)||(27560-27803)
[»] chr8 (1 HSPs)
chr8 (18-261)||(88286-88529)
[»] chr7 (2 HSPs)
chr7 (18-261)||(11713140-11713383)
chr7 (18-259)||(13162351-13162592)
[»] chr1 (3 HSPs)
chr1 (18-261)||(42377158-42377401)
chr1 (18-261)||(14474908-14475151)
chr1 (18-261)||(2795158-2795401)
[»] chr6 (1 HSPs)
chr6 (20-261)||(16775804-16776045)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 5381378 - 5381621
Alignment:
Q  18 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5381378 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 5381477  T
Q  118 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5381478 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 5381577  T
Q  218 atcataaattggctctaacacttcttctttttctggttcatctc 261  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  5381578 atcataaattggctctaaaacttcttctttttctggttcatctc 5381621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 13721145 - 13721388
Alignment:
Q  18 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||||    
T  13721145 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacctttccagtagtggtgcaacgagtatgga 13721244  T
Q  118 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 217  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13721245 aaatgtttttcctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcaacaacaatgagctcttc 13721344  T
Q  218 atcataaattggctctaacacttcttctttttctggttcatctc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13721345 atcataaattggctctaacacttcttctttttctggttcatctc 13721388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 24341603 - 24341682
Alignment:
Q  101 ggtgcaacgagtatggaaaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatca 180  Q
    ||||||||||||||| ||||| |||||||||||  ||||||||||||| ||||||||| ||||||| |||| | ||||||    
T  24341603 ggtgcaacgagtatgaaaaatgtttttcctcaagtaatgctcttcttgtgctgacatcatgtgtagccttcctatgatca 24341682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 27560 - 27803
Alignment:
Q  18 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27560 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 27659  T
Q  118 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 217  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27660 aaatgtttttcctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 27759  T
Q  218 atcataaattggctctaacacttcttctttttctggttcatctc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27760 atcataaattggctctaacacttcttctttttctggttcatctc 27803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 88529 - 88286
Alignment:
Q  18 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  88529 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 88430  T
Q  118 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 217  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88429 aaatgtttttcctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 88330  T
Q  218 atcataaattggctctaacacttcttctttttctggttcatctc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  88329 atcataaattggctctaacacttcttctttttctggttcatctc 88286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 11713383 - 11713140
Alignment:
Q  18 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11713383 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 11713284  T
Q  118 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 217  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11713283 aaatgtttttcctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 11713184  T
Q  218 atcataaattggctctaacacttcttctttttctggttcatctc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11713183 atcataaattggctctaacacttcttctttttctggttcatctc 11713140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 13162592 - 13162351
Alignment:
Q  18 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  13162592 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataatatcacaaacttttccagcagtggtgcaacgagtatgga 13162493  T
Q  118 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 217  Q
      || |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13162492 tgatgtttttcgtcaaccaatgctcttcttgggctgacatcgcgtgtaggcttcgtctgaacaccagagactcgccatgatcagcaacaatgagctcttc 13162393  T
Q  218 atcataaattggctctaacacttcttctttttctggttcatc 259  Q
    ||||||||||||||||||| || | ||||||||  |||||||    
T  13162392 atcataaattggctctaactctacatctttttcatgttcatc 13162351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 42377401 - 42377158
Alignment:
Q  18 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42377401 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 42377302  T
Q  118 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 217  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42377301 aaatgtttttcctcaaccaatactcttcttgagctgacatcgcgtgtaggcttcgtctgatcactagagactcgccatgatcagcaacaatgagctcttc 42377202  T
Q  218 atcataaattggctctaacacttcttctttttctggttcatctc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42377201 atcataaattggctctaacacttcttctttttctggttcatctc 42377158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 14474908 - 14475151
Alignment:
Q  18 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |    
T  14474908 tctaaattctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccagcagtggtgcaacgagtatgaa 14475007  T
Q  118 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 217  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14475008 aaatgtttttgctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 14475107  T
Q  218 atcataaattggctctaacacttcttctttttctggttcatctc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14475108 atcataaattggctctaacacttcttctttttctggttcatctc 14475151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 2795158 - 2795401
Alignment:
Q  18 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  2795158 tctaacttctccaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccggcagtggtgcaacgagtatgga 2795257  T
Q  118 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 217  Q
    |||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2795258 aaatgtttttcctcaacaaatgttcttcttgagctgacatcgcgtgtaggcttcgtctgatcactagagactcgccatgatcagcaacaatgagctcttc 2795357  T
Q  218 atcataaattggctctaacacttcttctttttctggttcatctc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2795358 atcataaattggctctaacacttcttctttttctggttcatctc 2795401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 16775804 - 16776045
Alignment:
Q  20 taacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatggaaa 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16775804 taacttctctaccatgtagttcgacaccacattttcaaaactaccactatctattataacatcacaaacttttccagcagtggtgcaacgagtatggaaa 16775903  T
Q  120 atatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttcat 219  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  16775904 atgtttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtcttatcactagagattcgccatgatcagcaacaatgagctcttcat 16776003  T
Q  220 cataaattggctctaacacttcttctttttctggttcatctc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16776004 cataaattggctctaacacttcttctttttctggttcatctc 16776045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University