View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7355_low_13 (Length: 240)
Name: NF7355_low_13
Description: NF7355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7355_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 33390751 - 33390972
Alignment:
| Q |
18 |
cttcgcagccttctccactgcatcccaatgaactttatcgctcacatttccatgccatgttttagctccaacaggtacaccaattttaagtacatcagtt |
117 |
Q |
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| T |
33390751 |
cttcacagccttctccactgcatcccaatgaactttatcactcacctttccatcccatgttttagctccaacaggtacaccaattttaagtacatcagtt |
33390850 |
T |
|
| Q |
118 |
accaacttctcattataaaattgctcaggagctataggccaagtaatcataggtactccagcagctacacattccaaagttaagttccatccacaatgag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33390851 |
accaacttctcattataaaattgctcaggagctataggccaagtaatcataggtactccagcagctacactttccaaagttaagttccatccacaatgag |
33390950 |
T |
|
| Q |
218 |
tcacaattgctccaatagcttt |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
33390951 |
tcacaattgctccaatagcttt |
33390972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 33383249 - 33383083
Alignment:
| Q |
72 |
ccatgttttagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatcataggt |
171 |
Q |
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|||| ||||| |||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||| |||| ||| | ||||||||||| |||||| |
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| T |
33383249 |
ccattttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggt |
33383150 |
T |
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| Q |
172 |
actccagcagctacacattccaaagttaagttccatccacaatgagtcacaattgctccaatagctt |
238 |
Q |
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| T |
33383149 |
accccagcaaccacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgctt |
33383083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 33401712 - 33401823
Alignment:
| Q |
109 |
acatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatcataggtactccagcagctacacattccaaagttaagttccatc |
208 |
Q |
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| T |
33401712 |
acatcagttatcaacttctcattgataaattgctcagctgaaagtggccaagtcgccataggtactccagcacacacaccttctaaagttgagttccatc |
33401811 |
T |
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| Q |
209 |
cacaatgagtca |
220 |
Q |
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| T |
33401812 |
cacaatgagtca |
33401823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 18989691 - 18989529
Alignment:
| Q |
77 |
ttttagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatcataggtactcc |
176 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
18989691 |
ttttatctccaacaggtacaccaattttaagtacttcagttaccaacttctcattataaaattcctcaaaagctataggccaagtaatcataggtactcc |
18989592 |
T |
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| Q |
177 |
agcagctacacattccaaagttaagttccatccacaatgagtcacaattgctccaatagcttt |
239 |
Q |
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| T |
18989591 |
agcagccacactttccaaagttaagttccatccacaatgagtcacaaatgctccaatagcttt |
18989529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 27688577 - 27688679
Alignment:
| Q |
77 |
ttttagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatcataggtactcc |
176 |
Q |
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||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||| | || | |||||||||||||||||||||||| |
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| T |
27688577 |
ttttaactccaacaggtacaccagttttaagtacctcagtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaatcataggtactcc |
27688676 |
T |
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| Q |
177 |
agc |
179 |
Q |
| |
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||| |
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| T |
27688677 |
agc |
27688679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 12613729 - 12613691
Alignment:
| Q |
201 |
gttccatccacaatgagtcacaattgctccaatagcttt |
239 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||||| |
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| T |
12613729 |
gttccaaccacaatgagtcacaattcctccaatagcttt |
12613691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 14710100 - 14710136
Alignment:
| Q |
203 |
tccatccacaatgagtcacaattgctccaatagcttt |
239 |
Q |
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| T |
14710100 |
tccaaccacaatgagtcacaattcctccaatagcttt |
14710136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 17620215 - 17620179
Alignment:
| Q |
203 |
tccatccacaatgagtcacaattgctccaatagcttt |
239 |
Q |
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|||| |||||||||||||||||| ||||||||||||| |
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| T |
17620215 |
tccaaccacaatgagtcacaattcctccaatagcttt |
17620179 |
T |
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