View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7355_low_5 (Length: 365)
Name: NF7355_low_5
Description: NF7355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7355_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 46670982 - 46671054
Alignment:
| Q |
216 |
gaaacttgcacgtatcgccaaaggaatcagccattttcatcgtctgccaaactgaaaactgtcatattgaccc |
288 |
Q |
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| T |
46670982 |
gaaacttgcacgtatcaccaaaggaatcagccattttcatcgtctgccaaactgaaaactgtcatattgaccc |
46671054 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 46670849 - 46670916
Alignment:
| Q |
83 |
tagtccaattcaatctaacaggaattaatttatcactaatataaagatagtattaaggatcaattttc |
150 |
Q |
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| T |
46670849 |
tagtccaattcaatctaacaggaattaatttatcactaatataaagatagtattaaggatcaattttc |
46670916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 46671080 - 46671121
Alignment:
| Q |
310 |
catgcaaatgggttatcacgttgcgtgtcaaccatagtaatg |
351 |
Q |
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| T |
46671080 |
catgcaaatgggttatcacgttgcgtgtcaaccatagtaatg |
46671121 |
T |
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