View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7355_low_6 (Length: 335)
Name: NF7355_low_6
Description: NF7355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7355_low_6 |
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| [»] scaffold0102 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 23701015 - 23700703
Alignment:
| Q |
1 |
tacaggaattgaaggttcttctactcatgaattacaatggatgtggtttcttttacatgacttccatcatgctccgtcacgcttgtctgttctctactgt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23701015 |
tacaggaattgaaggttctgctactcatgaattacaatggatgtggtttcttttacatgacttccatcatgctccgtcacgcttgtctgttctctactgt |
23700916 |
T |
|
| Q |
101 |
gataatcaaagtgtattgcatatctctgccaatcctgagtttcatgaacttaccaagcatcttgacattgattgtcatcttgttcgtgaaaagctacaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23700915 |
gataatcaaagtgtattgcatatctctgccaatcctgagtttcatgaacttaccaagcatcttgacattgattgtcatcttgttcgtgaaaagctacaag |
23700816 |
T |
|
| Q |
201 |
ctggtgtaatgagattgctacctgtttcttcacaaaaccaaacagcagatgtgtttacaaaagcagctggaccttgtcaatttcatgaatgcatcaccaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23700815 |
ctggtgtaatgagattgctacctgtttcttcacaaaaccaaacagcagatgtgtttacaaaagcagctggaccttgtcaatttcatgaatgcatcaccaa |
23700716 |
T |
|
| Q |
301 |
gcaagggatggca |
313 |
Q |
| |
|
||||||||||||| |
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|
| T |
23700715 |
gcaagggatggca |
23700703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 35 - 311
Target Start/End: Complemental strand, 23415633 - 23415357
Alignment:
| Q |
35 |
caatggatgtggtttcttttacatgacttccatcatgctccgtcacgcttgtctgttctctactgtgataatcaaagtgtattgcatatctctgccaatc |
134 |
Q |
| |
|
||||||||||| ||||| ||| |||||| ||||| ||||| || || ||| ||||| | ||||||||||| || |||| ||||||||| || || |||| |
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|
| T |
23415633 |
caatggatgtgctttctcttatctgacttgcatcaagctccttctcgtttgcctgttttgtactgtgataaccagagtgcattgcatatttcagctaatc |
23415534 |
T |
|
| Q |
135 |
ctgagtttcatgaacttaccaagcatcttgacattgattgtcatcttgttcgtgaaaagctacaagctggtgtaatgagattgctacctgtttcttcaca |
234 |
Q |
| |
|
||| ||||||||||| || || ||||| ||||| || ||||| | || ||||| || | ||||| || ||||||||| || ||||| ||||||| | |
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|
| T |
23415533 |
ctgtgtttcatgaacgcacaaaacatctggacatagactgtcacttggtacgtgagaaagtgcaagcaggagtaatgagactgttacctatttcttctcg |
23415434 |
T |
|
| Q |
235 |
aaaccaaacagcagatgtgtttacaaaagcagctggaccttgtcaatttcatgaatgcatcaccaagcaagggatgg |
311 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||| || || | || || |||||||||||||||||| ||||||| |
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|
| T |
23415433 |
taatcaaactgcagatgtgttcacaaaagcagcagggccaaggcatttctatgaatgcatcaccaagcttgggatgg |
23415357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 311
Target Start/End: Original strand, 2040 - 2316
Alignment:
| Q |
35 |
caatggatgtggtttcttttacatgacttccatcatgctccgtcacgcttgtctgttctctactgtgataatcaaagtgtattgcatatctctgccaatc |
134 |
Q |
| |
|
||||||||||| ||||| ||| |||||| ||||| ||||| || || ||| ||||| | ||||||||||| || |||| ||||||||| || || |||| |
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|
| T |
2040 |
caatggatgtgctttctcttatctgacttgcatcaagctccttctcgtttgcctgttttgtactgtgataaccagagtgcattgcatatttcagctaatc |
2139 |
T |
|
| Q |
135 |
ctgagtttcatgaacttaccaagcatcttgacattgattgtcatcttgttcgtgaaaagctacaagctggtgtaatgagattgctacctgtttcttcaca |
234 |
Q |
| |
|
||| ||||||||||| || || ||||| ||||| || ||||| | || ||||| || | ||||| || ||||||||| || ||||| ||||||| | |
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|
| T |
2140 |
ctgtgtttcatgaacgcacaaaacatctggacatagactgtcacttggtacgtgagaaagtgcaagcaggagtaatgagactgttacctatttcttctcg |
2239 |
T |
|
| Q |
235 |
aaaccaaacagcagatgtgtttacaaaagcagctggaccttgtcaatttcatgaatgcatcaccaagcaagggatgg |
311 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||| || || | ||||| |||||||||||||||||| ||||||| |
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|
| T |
2240 |
taatcaaactgcagatgtgttcacaaaagcagcagggccaaggcaattctatgaatgcatcaccaagcttgggatgg |
2316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 35 - 311
Target Start/End: Original strand, 6393 - 6669
Alignment:
| Q |
35 |
caatggatgtggtttcttttacatgacttccatcatgctccgtcacgcttgtctgttctctactgtgataatcaaagtgtattgcatatctctgccaatc |
134 |
Q |
| |
|
||||||||||| ||||| ||| |||||| ||||| ||||| || || ||| ||||| | ||||||||||| || |||| ||||||||| || || |||| |
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|
| T |
6393 |
caatggatgtgctttctcttatctgacttgcatcaagctccttctcgtttgcctgttttgtactgtgataaccagagtgcattgcatatttcagctaatc |
6492 |
T |
|
| Q |
135 |
ctgagtttcatgaacttaccaagcatcttgacattgattgtcatcttgttcgtgaaaagctacaagctggtgtaatgagattgctacctgtttcttcaca |
234 |
Q |
| |
|
||| ||||||||||| || || ||||| ||||| || ||||| | || ||||| || | ||||| || ||||||||| || ||||| ||||||| | |
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|
| T |
6493 |
ctgtgtttcatgaacgcacaaaacatctggacatagactgtcacttggtacgtgagaaagtgcaagcaggagtaatgagactgttacctatttcttctcg |
6592 |
T |
|
| Q |
235 |
aaaccaaacagcagatgtgtttacaaaagcagctggaccttgtcaatttcatgaatgcatcaccaagcaagggatgg |
311 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||| || || | || || |||||||||||||||||| ||||||| |
|
|
| T |
6593 |
taatcaaactgcagatgtgttcacaaaagcagcagggccaaggcagttctatgaatgcatcaccaagcttgggatgg |
6669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 263
Target Start/End: Complemental strand, 31230400 - 31230232
Alignment:
| Q |
95 |
tactgtgataatcaaagtgtattgcatatctctgccaatcctgagtttcatgaacttaccaagcatcttgacattgattgtcatcttgttcgtgaaaagc |
194 |
Q |
| |
|
|||||||||||||| |||| |||||||| || |||||||||| ||||||||||| || ||||| ||||||||||| ||||| | ||||||||||| |
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|
| T |
31230400 |
tactgtgataatcagagtgctttgcatatttcggccaatcctgtgtttcatgaacgcacaaagcaccttgacattgactgtcacttggttcgtgaaaaat |
31230301 |
T |
|
| Q |
195 |
tacaagctggtgtaatgagattgctacctgtttcttcacaaaaccaaacagcagatgtgtttacaaaag |
263 |
Q |
| |
|
|||||||||| || |||||||| | || |||||||||| || ||||| || ||||| ||||| |||| |
|
|
| T |
31230300 |
tacaagctggagttatgagattattgtctatttcttcacataatcaaactgctgatgtctttaccaaag |
31230232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 20605622 - 20605740
Alignment:
| Q |
98 |
tgtgataatcaaagtgtattgcatatctctgccaatcctgagtttcatgaacttaccaagcatcttgacattgattgtcatcttgttcgtgaaaagctac |
197 |
Q |
| |
|
||||| ||| |||||| |||||||| || || ||||||| ||||||||| | |||||| ||||| || ||||||||||||||||||| ||| || || | |
|
|
| T |
20605622 |
tgtgacaattaaagtgctttgcatatttcagctaatcctgtgtttcatgagcgtaccaaacatctagatattgattgtcatcttgttcatgagaaactgc |
20605721 |
T |
|
| Q |
198 |
aagctggtgtaatgagatt |
216 |
Q |
| |
|
|||||||||| |||||||| |
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|
| T |
20605722 |
aagctggtgttatgagatt |
20605740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 4676316 - 4676202
Alignment:
| Q |
35 |
caatggatgtggtttcttttacatgacttccatcatgctccgtcacgcttgtctgttctctactgtgataatcaaagtgtattgcatatctctgccaatc |
134 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||| ||||| || || ||| ||||| | ||||||||||| || |||| ||||||||| || || |||| |
|
|
| T |
4676316 |
caatggatgtgctttctcttatctgacttccatcaagctccttctcgtttgcctgttttgtactgtgataaccagagtgcattgcatatttcagctaatc |
4676217 |
T |
|
| Q |
135 |
ctgagtttcatgaac |
149 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
4676216 |
ctgtgtttcatgaac |
4676202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 4674802 - 4674688
Alignment:
| Q |
197 |
caagctggtgtaatgagattgctacctgtttcttcacaaaaccaaacagcagatgtgtttacaaaagcagctggaccttgtcaatttcatgaatgcatca |
296 |
Q |
| |
|
||||| || ||||||||| || ||||| ||||||| | || ||||| ||||||||||| ||||||||||| || || | ||||| |||||||||||| |
|
|
| T |
4674802 |
caagcaggagtaatgagactgttacctatttcttctcgtaatcaaactgcagatgtgttcacaaaagcagcagggccaaggcaattctatgaatgcatca |
4674703 |
T |
|
| Q |
297 |
ccaagcaagggatgg |
311 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
4674702 |
ccaagcttgggatgg |
4674688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 258
Target Start/End: Original strand, 24509399 - 24509565
Alignment:
| Q |
92 |
ctctactgtgataatcaaagtgtattgcatatctctgccaatcctgagtttcatgaacttaccaagcatcttgacattgattgtcatcttgttcgtgaaa |
191 |
Q |
| |
|
||||| ||||||||||| ||| ||||| || || || || |||| ||||||||| | ||||| ||||| || ||||||||||||||||| || || | |
|
|
| T |
24509399 |
ctctattgtgataatcagagtcccttgcacatatcagctaaccctgtgtttcatgagcgcaccaaacatctagatattgattgtcatcttgtacgagaga |
24509498 |
T |
|
| Q |
192 |
agctacaagctggtgtaatgagattgctacctgtttcttcacaaaaccaaacagcagatgtgtttac |
258 |
Q |
| |
|
|| | |||||||| || |||||||| ||||| |||||||||| || ||||| |||||||||||||| |
|
|
| T |
24509499 |
agttgcaagctggagttatgagattactacccatttcttcacacaatcaaactgcagatgtgtttac |
24509565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 20523082 - 20523122
Alignment:
| Q |
167 |
attgattgtcatcttgttcgtgaaaagctacaagctggtgt |
207 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
20523082 |
attgattgtcatcttgttcgttaaaagatacaagttggtgt |
20523122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 22845138 - 22845255
Alignment:
| Q |
87 |
ctgttctctactgtgataatcaaagtgtattgcatatctctgccaatcctgagtttcatgaacttaccaagcatcttgacattgattgtcatcttgttcg |
186 |
Q |
| |
|
|||| |||||||||||||| || |||| | | || || || || ||||| | ||||||||||| |||||||| | ||||||||||||||||| || || |
|
|
| T |
22845138 |
ctgtactctactgtgataaccagagtgcacttcacatatcagctaatccagtgtttcatgaacgcaccaagcacttagacattgattgtcatctagtacg |
22845237 |
T |
|
| Q |
187 |
tgaaaagctacaagctgg |
204 |
Q |
| |
|
||||||| | |||||||| |
|
|
| T |
22845238 |
tgaaaagattcaagctgg |
22845255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 14236644 - 14236759
Alignment:
| Q |
87 |
ctgttctctactgtgataatcaaagtgtattgcatatctctgccaatcctgagtttcatgaacttaccaagcatcttgacattgattgtcatcttgttcg |
186 |
Q |
| |
|
|||| |||||||||||||| || |||| | | || || || || ||||| | ||||||||||| |||||||| | ||||||||||||||||| || || |
|
|
| T |
14236644 |
ctgtactctactgtgataaccagagtgcacttcacatatcagctaatccagtgtttcatgaacgcaccaagcacttagacattgattgtcatctagtacg |
14236743 |
T |
|
| Q |
187 |
tgaaaagctacaagct |
202 |
Q |
| |
|
||||||| | |||||| |
|
|
| T |
14236744 |
tgaaaagattcaagct |
14236759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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