View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7356_high_1 (Length: 628)
Name: NF7356_high_1
Description: NF7356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7356_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 16 - 612
Target Start/End: Original strand, 46010725 - 46011334
Alignment:
| Q |
16 |
caaacaagaaaagcctcaaagaattctaacatccactttcaagtcattaggccattgtgcctaagcctaattgttgtccttttttcttcctatctctctc |
115 |
Q |
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| T |
46010725 |
caaacaagaagagcctcaaagaattctaatatccactttcaagtcattaggccattgtgcctaagcctaattgttgtccttttttcttcctatctctctc |
46010824 |
T |
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| Q |
116 |
tt------------ctgcctatacacaattaacccaaataaacctctgtcaatattctaatgaaatgtttaatgtcaagtatacacatggagtgataata |
203 |
Q |
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| T |
46010825 |
tctctctctctctcctgcctatacacaattaacccaaataaacctctgtcaatattctaatgaaatgtttaatgtcaagtatacacatggagtgataata |
46010924 |
T |
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| Q |
204 |
agatgagttagggtcttttagagggatcaacataaggattagactgatcacaaggaagtgttcaactccttcattataaccaccattaaaa-acatggag |
302 |
Q |
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| T |
46010925 |
agatgagttagggtcttttagagggatcaacataaggattagactgatcacaaggaagtgttcaactccttcattataaccaccattaaaaaacatggag |
46011024 |
T |
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| Q |
303 |
cttgattatttttagttgtgtctgatatgatgggggcggccactaagcgtacacgagtggaagagtttaaaagggatttaacttgtatgtaagaaataat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46011025 |
cttgattatttttagttgtgtctgatatgatgggggcggccactaagcgtacacgagtggaagagtttaaaagggatttaacttgtatataagaaataat |
46011124 |
T |
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| Q |
403 |
caaattaatataatttcgaggacttgattaatcaaggcacacattcacatatatatttgcgagagttcaatgtttaagtgaggaaaaagaatctcagtca |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
46011125 |
caaattaatataatttcgaggacttgattaatcaaggcacacattcacatatatatttgcgagagttcaatgtttgagcgaggaaaaagaatctcagtca |
46011224 |
T |
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| Q |
503 |
gccccaggaagaagtttctgagtagattgcctgctggttgttccaaaacctcctctaacacctgcagggatgattctggatggtgacaacacctctgcaa |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46011225 |
gccccaggaagaagtttctgagtagattgcctgctggttgttccaaaacctcctctaacacctgcagggatgattctggatggtgacaacacctctgcaa |
46011324 |
T |
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| Q |
603 |
acgaaaattt |
612 |
Q |
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| T |
46011325 |
acgaaaattt |
46011334 |
T |
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