View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7356_high_10 (Length: 246)

Name: NF7356_high_10
Description: NF7356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7356_high_10
NF7356_high_10
[»] chr3 (11 HSPs)
chr3 (1-235)||(6234956-6235190)
chr3 (43-190)||(6165806-6165953)
chr3 (76-160)||(6242195-6242279)
chr3 (126-190)||(6255836-6255900)
chr3 (58-141)||(6879541-6879624)
chr3 (43-124)||(6256186-6256267)
chr3 (1-37)||(6242420-6242456)
chr3 (187-235)||(6165725-6165773)
chr3 (61-190)||(6851986-6852117)
chr3 (1-37)||(6166013-6166049)
chr3 (1-37)||(6256322-6256358)
[»] scaffold0425 (1 HSPs)
scaffold0425 (56-190)||(14414-14550)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6235190 - 6234956
Alignment:
Q  1 gaattacttgtgtctaccaattataaggtgaggatattatagaaaatattatagtaaataaaaaattgaaagttttgccactttgttatcagtgaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6235190 gaattacttgtgtctaccaattataaggtgaggatattatagaaaatattatagtaaataaaaaattgaaagttttgccactttgttatcagtgaaattt 6235091  T
Q  101 ggtgttttctaatcatagttgaaccatgatttaatcaaatttctcgtggctgttattattcagcaccggcatattaaaaataaaatatacagaaacattg 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6235090 ggtattttctaatcatagttgaaccatgatttaatcaaatttctcgtggctgttattattcagcaccggcatattaaaaataaaatatacagaaacattg 6234991  T
Q  201 gctggctgcaagaattttctcacttttctctgcta 235  Q
    |||||||||||||||||||||||||||||||||||    
T  6234990 gctggctgcaagaattttctcacttttctctgcta 6234956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 6165953 - 6165806
Alignment:
Q  43 aaaatattatagtaaataaaaaattgaaagttttgccactttgttatcagtgaaatttggtgttttctaatcatagttgaaccatgatttaatcaaattt 142  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  6165953 aaaatattatagaaaataaaaaattgaaagtcatgccactttgttatcagtgaaatttggtgttttctaatcatagttggacaatgatttaatcaaattt 6165854  T
Q  143 ctcgtggctgttattattcagcaccggcatattaaaaataaaatatac 190  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||    
T  6165853 cttgtggctgttattattcagcactggcatattaaaaataaaatatac 6165806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 6242279 - 6242195
Alignment:
Q  76 tgccactttgttatcagtgaaatttggtgttttctaatcatagttgaaccatgatttaatcaaatttctcgtggctgttattatt 160  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6242279 tgccactttgttatcagtgaaatttggtgttttttaatcatagttgaaccatgatttaatcaaatttcttgtggctgttattatt 6242195  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 6255900 - 6255836
Alignment:
Q  126 atgatttaatcaaatttctcgtggctgttattattcagcaccggcatattaaaaataaaatatac 190  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  6255900 atgatttaatcaaatttcttgtggctgttattattctgcaccggcatattaaaaataaaatatac 6255836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 6879624 - 6879541
Alignment:
Q  58 ataaaaaattgaaagttttgccactttgttatcagtgaaatttggtgttttctaatcatagttgaaccatgatttaatcaaatt 141  Q
    ||||||||||||| ||  || ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||    
T  6879624 ataaaaaattgaatgtcatggcactttgttatcagtgaaatttggtgttttctaatcatagtcggaccatgttttaagcaaatt 6879541  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 6256267 - 6256186
Alignment:
Q  43 aaaatattatagtaaataaaaaa-ttgaaagttttgccactttgttatcagtgaaatttggtgttttctaatcatagttgaac 124  Q
    |||||||| ||| |||||||||| ||||||||| || |||||||||| |||||||||||||| ||||||||||||||||||||    
T  6256267 aaaatattgtagaaaataaaaaaattgaaagttatgtcactttgttaccagtgaaatttggt-ttttctaatcatagttgaac 6256186  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6242456 - 6242420
Alignment:
Q  1 gaattacttgtgtctaccaattataaggtgaggatat 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  6242456 gaattacttgtgtctaccaattataaggtgaggatat 6242420  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 6165773 - 6165725
Alignment:
Q  187 atacagaaacattggctggctgcaagaattttctcacttttctctgcta 235  Q
    ||||||||||| |||||| || |||||||||||||| ||||||||||||    
T  6165773 atacagaaacagtggctgcctacaagaattttctcatttttctctgcta 6165725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 6851986 - 6852117
Alignment:
Q  61 aaaaattgaaagttttgccactttgttatca--gtgaaatttggtgttttctaatcatagttgaaccatgatttaatcaaatttctcgtggctgttatta 158  Q
    |||||||||| ||  ||||| |||||| |||  |||||||||||||||||||||| ||| ||| | |||||| |||||||||| || ||| ||| || ||    
T  6851986 aaaaattgaaggtcgtgccattttgttgtcaaagtgaaatttggtgttttctaatgatacttgtatcatgatctaatcaaattccttgtgactgataata 6852085  T
Q  159 ttcagcaccggcatattaaaaataaaatatac 190  Q
    |||  ||||   ||||||||||  ||||||||    
T  6852086 ttcttcaccattatattaaaaagtaaatatac 6852117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6166049 - 6166013
Alignment:
Q  1 gaattacttgtgtctaccaattataaggtgaggatat 37  Q
    ||||||||||| || ||||||||||||||||||||||    
T  6166049 gaattacttgtttcaaccaattataaggtgaggatat 6166013  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6256358 - 6256322
Alignment:
Q  1 gaattacttgtgtctaccaattataaggtgaggatat 37  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  6256358 gaataacttgcgtctaccaattataaggtgaggatat 6256322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 14414 - 14550
Alignment:
Q  56 aaataaaaaattgaaagttttgccactttgttatca--gtgaaatttggtgttttctaatcatagttgaaccatgatttaatcaaatttctcgtggctgt 153  Q
    ||||||||||||||| ||  |||||||||||| |||  |||||||||||||||||||||| ||| ||| | |||||| |||||||||| |  ||| |||     
T  14414 aaataaaaaattgaaggtcgtgccactttgttgtcaaagtgaaatttggtgttttctaatgatacttgtatcatgatctaatcaaattccatgtgactga 14513  T
Q  154 tattattcagcaccggcatattaaaaataaaatatac 190  Q
    || |||||  ||||| |||||||||||  ||||||||    
T  14514 taatattcttcaccgtcatattaaaaagtaaatatac 14550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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