View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7356_high_3 (Length: 473)
Name: NF7356_high_3
Description: NF7356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7356_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Original strand, 36348586 - 36349031
Alignment:
| Q |
17 |
atttgtgatatcttactttatttttgttccttttgcatgagttttcccaccatatggttccttttccatctagggttccaccaccattaactactagttg |
116 |
Q |
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| T |
36348586 |
atttgtgatatcttactttatttttgttccttttgcatgagttttcccaccatatggttccttttccatctagggttccaccaccattaactactagttg |
36348685 |
T |
|
| Q |
117 |
ttgaactttggcaaatacaagccaatgtcctggatctttactataatctgatggattatttgatgctatgagaagtccagatatctgacaattaaatttt |
216 |
Q |
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| T |
36348686 |
ttgaactttggcaaatacaagccaatgtcctggatctttactataatctgatggattatttgatgctatgagaactccagatatctgacaattaaatttt |
36348785 |
T |
|
| Q |
217 |
cgnnnnnnnnttactttttgagattataattaattataatttacttaaaaaggtgaagcttaaaatatgaagaactaaatagtagttcattataatgtaa |
316 |
Q |
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| T |
36348786 |
cgaaaaaaa-ttactttttgagattataattaattataatttacttaaaaaggtgaagcttaaaatatgaagaactaaatagt---tcattataatgtaa |
36348881 |
T |
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| Q |
317 |
ctgacctggactgatatcttagatttgcaaggaccagagaatctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcc---c |
413 |
Q |
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| T |
36348882 |
ctgacctggaatgatatcttagatttgcaaggaccagagaatctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctc |
36348981 |
T |
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| Q |
414 |
ctcctgaagaacatactgcttcccaagtcttctcgaatgcctgagtatta |
463 |
Q |
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| T |
36348982 |
ctcctgaagaacatactgcttcccaagccttctcgaatgcctgaatatta |
36349031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 17 - 464
Target Start/End: Original strand, 36359843 - 36360290
Alignment:
| Q |
17 |
atttgtgatatcttactttatttttgttccttttgcatgagttttcccaccatatggttccttttccatctagggttccaccaccattaactactagttg |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||| |
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| T |
36359843 |
atttgtgatatcttactttctttttgttccttttgcatgagttttcccaccatatgtttccttttccatcgatggttccaccaccattaactaatagttg |
36359942 |
T |
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| Q |
117 |
ttgaactttggcaaatacaagccaatgtcctggatctttactataatctgatggattatttgatgctatgagaagtccagatatctgacaattaaatttt |
216 |
Q |
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|||||||| |||||||||||||||||| | |||||| ||| |||||||||||||||| ||||||| ||| ||||||||||| |||| |||||||| |
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| T |
36359943 |
ttgaacttccacaaatacaagccaatgtctttgatcttcactgtaatctgatggattatctgatgcttcaagacttccagatatcttacaaataaatttt |
36360042 |
T |
|
| Q |
217 |
cgnnnnnnnnttactttttgagattataattaattataatttacttaaaaaggtgaagcttaaaatatgaagaactaaatag-tagttcat--------- |
306 |
Q |
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| T |
36360043 |
tg-aaaaaagttactttttgag----------attataatttacttaaaaatatggagcttaaaaaaggaagaactaattagttaattaatcactagctt |
36360131 |
T |
|
| Q |
307 |
----tataatgtaactgacctggactgatatcttagatttgcaaggaccagagaatctgattggtttgagtagataaatattatcttgaggtgcaacaaa |
402 |
Q |
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||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || || |
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| T |
36360132 |
aatatataatgtagctaacctgaactgatatgttagatttgcaaggaccagagaatctgattggtttgagtagataattataatcttgaggtgccactaa |
36360231 |
T |
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| Q |
403 |
aactgcttcccctcctgaagaacatactgcttcccaagtcttctcgaatgcctgagtattat |
464 |
Q |
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||||| || | ||||| ||||||||| ||||||||| ||||| |||||||||| |||||| |
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| T |
36360232 |
aactgattgc---cctgacgaacatactacttcccaagccttcttgaatgcctgaatattat |
36360290 |
T |
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