View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7356_high_4 (Length: 336)
Name: NF7356_high_4
Description: NF7356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7356_high_4 |
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| [»] scaffold0468 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 12600568 - 12600258
Alignment:
| Q |
17 |
agatacttgtgtttgaaatgatttcgaatggtatgaaataccagtgctttgttatatcgtggttttcttccaaacttgtttaatattactaagttttaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12600568 |
agatacttgtgtttgaaatgatttcgaatggtatgaaacgccagtgctttgttatatcttggttttcttccaaacttgtttaatattactaagttttaag |
12600469 |
T |
|
| Q |
117 |
tgaataacaactagatctctttgataaaagtcaaggtaaatcctttccaatggactcgtctcgggtcattagaaagacacttataatctctagtgaggtc |
216 |
Q |
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| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12600468 |
tcaataacaactagatttctttgataaaagtcaaggtaaatcctttccaatggactcgtctcgagtcattagaaagacacttataatctctagtgaggtc |
12600369 |
T |
|
| Q |
217 |
gacatgatcaagttgtaaaagtttcagtttcttcatcctttttaaagaatcagtactgacgaaaagtcaaatgctttgcaaacttcaaaaccaagtcatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12600368 |
aacatgatcaagttgtaaaagtttcagtttcttcatcctttttaaagaatcagtactgacgaaaagtcaaatgctttgcaaacttcaaaaccaagtcatt |
12600269 |
T |
|
| Q |
317 |
cacaggttctg |
327 |
Q |
| |
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|||||||||| |
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| T |
12600268 |
tacaggttctg |
12600258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 23 - 327
Target Start/End: Original strand, 15806129 - 15806445
Alignment:
| Q |
23 |
ttgtgtttgaaatgatttcgaatggtatgaaataccagtgctttgttatatcgtggttttcttccaaacttgtttaatattactaagttttaagtgaata |
122 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||| |||| |
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| T |
15806129 |
ttgtgtttgaaatgattttgaatggtatgaaatgccagtgctttgttatatcttggttttcttccaaacttgttttatactactatgttttaagtcaata |
15806228 |
T |
|
| Q |
123 |
acaactagatctctttgataaaagtca----------------aggtaaatcctttccaatggactcgtctcgggtcattagaaagacacttataatctc |
206 |
Q |
| |
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|||| ||| |||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| |
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| T |
15806229 |
acaa---gatttctttgataaaagtcatcaggtattttgttgaaggtaaatcctttccaatgtattcgtctcaggtcattagaaagacacttataatctc |
15806325 |
T |
|
| Q |
207 |
tagtgaggtcgacatgatcaagttgtaaaagtttcagtttcttcatcctttttaaagaatcagtactgacgaaaagtcaaatgctttgcaaacttcaaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15806326 |
tagtgaggtcgacatgatcaagttgtaaaagtctc-gtttcttcatcctttttaaagaatcagtactgacgaaaagttaaatgctttgcaaacttcaaag |
15806424 |
T |
|
| Q |
307 |
ccaagtcattcacaggttctg |
327 |
Q |
| |
|
|||||||||| |||||||||| |
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|
| T |
15806425 |
ccaagtcatttacaggttctg |
15806445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 30417313 - 30417261
Alignment:
| Q |
201 |
aatctctagtgaggtcgacatgatcaagttgtaaaagtttcagtttcttcatc |
253 |
Q |
| |
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|||||| ||||||||| ||| |||||||||||||||| |||||||||||||| |
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| T |
30417313 |
aatctccagtgaggtcaacacaatcaagttgtaaaagtctcagtttcttcatc |
30417261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 267
Target Start/End: Original strand, 3321119 - 3321376
Alignment:
| Q |
21 |
acttgtgtttgaaatgatttcgaatggtatgaaataccagtgctttgttatatcgtggttttcttccaaacttgtttaatattactaagttttaagtgaa |
120 |
Q |
| |
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|||| ||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| || || |
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| T |
3321119 |
acttctgtttgaaatgattttgaatggtatgaatcgccggtgctttgttatatcttggttttcttccaaacttgtttaatactactatgttttacgtcaa |
3321218 |
T |
|
| Q |
121 |
taacaactagatctctttgataaaagtca----------------aggtaaatcctttccaatggactcgtctcgggtcattagaaagacacttataatc |
204 |
Q |
| |
|
|||||||| || || ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
3321219 |
taacaact-----tccctgttaaaagtcatcagatatattgttgaaggtaaatcctttccaatgggctcgtctcaggtcattagaaagacacttataatc |
3321313 |
T |
|
| Q |
205 |
tctagtgaggtcgacatgatcaagttgtaaaagtttcagtttcttcatcctttttaaagaatc |
267 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||| |
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| T |
3321314 |
tctagtgaggtccacatgatcaagttgtaaaagtctcattttcttcatcctctttaaagaatc |
3321376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 26 - 272
Target Start/End: Original strand, 3366997 - 3367259
Alignment:
| Q |
26 |
tgtttgaaatgatttcgaatggtatgaaataccagtgctttgttatatcgtggttttcttccaaacttgtttaatattactaagttttaagtgaataaca |
125 |
Q |
| |
|
||||| |||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||| ||||| | |
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| T |
3366997 |
tgtttcaaatgatttcgaatggtatgaagcgccggtgctttgttatatcttggtcttcttccaaacttgtttaatactaccaagttttaagtcaataata |
3367096 |
T |
|
| Q |
126 |
actagatctctttgataaaagtca----------------aggtaaatcctttccaatggactcgtctcgggtcattagaaagacacttataatctctag |
209 |
Q |
| |
|
||||||| || | |||||||||| |||||||||||||| |||| |||||||| |||||||||||| ||||||| ||||||||| |
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| T |
3367097 |
actagatttccctaataaaagtcatcaggtatattgttgaaggtaaatcctttcgaatgagctcgtctcaggtcattagaaaaacacttaaaatctctag |
3367196 |
T |
|
| Q |
210 |
tgaggtcgacatgatcaagttgtaaaagtttcagtttcttcatcctttttaaagaatcagtac |
272 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||||| ||||||||| ||| |||||| |||||| |
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|
| T |
3367197 |
tgaggtcgacatgatcaaattgaaaaagtctcagtctcttcatccctttgaaagaaccagtac |
3367259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 315
Target Start/End: Complemental strand, 3388004 - 3387900
Alignment:
| Q |
210 |
tgaggtcgacatgatcaagttgtaaaagtttcagtttcttcatcctttttaaagaatcagtactgacgaaaagtcaaatgctttgcaaacttcaaaacca |
309 |
Q |
| |
|
|||||| |||||||||||||||| | || |||||||||||||||| ||||||||||||||||||| ||||||| | | || ||| ||||||||||||| |
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|
| T |
3388004 |
tgaggttgacatgatcaagttgtgacagactcagtttcttcatcctctttaaagaatcagtactgaagaaaagtttacttctctgc-aacttcaaaacca |
3387906 |
T |
|
| Q |
310 |
agtcat |
315 |
Q |
| |
|
|||||| |
|
|
| T |
3387905 |
agtcat |
3387900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 3408028 - 3408079
Alignment:
| Q |
201 |
aatctctagtgaggtcgacatgatcaagttgtaaaagtttcagtttcttcat |
252 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||||||| | ||||||||||| |
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|
| T |
3408028 |
aatctccagtgaggtcaacacgatcaagttgtaaaagtctaagtttcttcat |
3408079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 3263211 - 3263300
Alignment:
| Q |
163 |
ccaatggactcgtctcgggtcattagaaagacacttataatctctagtgaggtcgacatgatcaagttgtaaaagtttcagtttcttcat |
252 |
Q |
| |
|
||||||||| | |||| | || ||||||||| || |||||||| ||| ||||| |||| ||||||||||| |||| |||| |||||||| |
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|
| T |
3263211 |
ccaatggacccatctcagttctttagaaagatacccataatctccagtcaggtccacattatcaagttgtagaagtctcagattcttcat |
3263300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 3325705 - 3325758
Alignment:
| Q |
220 |
atgatcaagttgtaaaagtttcagtttcttcatcctttttaaagaatcagtact |
273 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
3325705 |
atgatcaagttgcaaaagtctcagtttcttcatctccttgaaagaatcagtact |
3325758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 3263116 - 3263164
Alignment:
| Q |
84 |
ttccaaacttgtttaatattactaagttttaagtgaataacaactagat |
132 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||||| ||||||||| |||| |
|
|
| T |
3263116 |
ttccaaacttgtttgatattgctatgttttaagtcaataacaacgagat |
3263164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 6906371 - 6906443
Alignment:
| Q |
76 |
tggttttcttccaaacttgtttaatattactaagttttaagtgaataacaactagatctctttgataaaagtc |
148 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||| |||||| | | ||||||||||| || |||||||||||| |
|
|
| T |
6906371 |
tggtttccttccaaacttgtttaacattgctaaattttaattctaaaacaactagatttccttgataaaagtc |
6906443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 6711 - 6784
Alignment:
| Q |
76 |
tggttttcttccaaacttgtttaatattactaagttttaagtgaataacaactagatctctttgataaaagtca |
149 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||| |||||| | | ||||||||||| || ||||| ||||||| |
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|
| T |
6711 |
tggtttccttccaaacttgtttaacattgctaaattttaattctaaaacaactagatttccttgatgaaagtca |
6784 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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