View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7356_low_3 (Length: 475)
Name: NF7356_low_3
Description: NF7356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7356_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 35194508 - 35194979
Alignment:
| Q |
1 |
caatattggtgacttgaagaaccttccttgttttgattatgtggaacaaccagagaaaggaaacaacaaccttgtggattgtgctgtttgtttggagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35194508 |
caatattggtgacttgaagaaccttccttgttttgattatgtggaacaaccagagaaaggaaacaacaaccttgtggattgtgctgtttgtttggagagt |
35194607 |
T |
|
| Q |
101 |
tttaaggttggtgatgcttgtaggttgttgcctaattgcaggcatagctttcatgttcagtgtatagatttgtggattctcaagacacccttttgtccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35194608 |
tttaaggttggtgatgcttgtaggttgttgcctaattgcaggcatagctttcatgttcagtgtatagatttgtggattctcaagacacccttttgtccaa |
35194707 |
T |
|
| Q |
201 |
tttgtagaacatgggttcattcacgtgtaattatgagggaaggaagtgctgattctgatattgtacatattgaaatgccataaagatcaaggcaaatcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35194708 |
tttgtagaacatgggttcattcacgtgtaattatgagggaaggaagtgctgattctgatattgtacatattgaaatgccataaagatcaaggcaaatcaa |
35194807 |
T |
|
| Q |
301 |
aaagttctatattgttgttgaattgaacagttagctggatttgagctccaggtgtaatatttttggggtttttctattacctttggtaagaaagtaaata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35194808 |
aaagttctatattgttgttgaattgaacagtcagctggatttgagctccaggtgtaatatttttggggtttttctattacctttggtaagaaagtaaata |
35194907 |
T |
|
| Q |
401 |
tttctcnnnnnnnnnnnnnnnctttcaaagagtctagcggcgaaacacacaccactaaatgctgagaagtgg |
472 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35194908 |
tttctttttttgtttttttttctttcaaagagtctagcggcgaaacacacaccactaaatgctgagaagtgg |
35194979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University