View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7356_low_9 (Length: 264)

Name: NF7356_low_9
Description: NF7356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7356_low_9
NF7356_low_9
[»] chr4 (5 HSPs)
chr4 (12-264)||(46010383-46010635)
chr4 (190-238)||(39724064-39724112)
chr4 (198-237)||(21687591-21687630)
chr4 (190-237)||(23614677-23614724)
chr4 (190-232)||(53261624-53261666)
[»] chr8 (5 HSPs)
chr8 (161-225)||(31844185-31844250)
chr8 (161-232)||(1876450-1876522)
chr8 (190-237)||(34722775-34722822)
chr8 (196-237)||(1445137-1445178)
chr8 (191-232)||(36907866-36907907)
[»] chr6 (2 HSPs)
chr6 (181-258)||(29716753-29716830)
chr6 (196-237)||(23344633-23344674)
[»] chr3 (2 HSPs)
chr3 (190-237)||(20821365-20821412)
chr3 (181-233)||(39651982-39652034)
[»] chr7 (2 HSPs)
chr7 (192-237)||(7432698-7432743)
chr7 (161-254)||(43492169-43492263)
[»] chr2 (2 HSPs)
chr2 (181-237)||(431622-431678)
chr2 (184-237)||(11385514-11385567)
[»] chr5 (2 HSPs)
chr5 (190-232)||(16636661-16636703)
chr5 (159-225)||(27794827-27794892)
[»] chr1 (2 HSPs)
chr1 (190-232)||(38172711-38172753)
chr1 (195-231)||(32169412-32169448)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 46010383 - 46010635
Alignment:
Q  12 gtttggtgttagttgactaggaggtaatcttgaaggaatataagcatgcctctacaaagtgacttcataaaccaaaacatcaagttttccagcaataaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  46010383 gtttggtgttagttgactaggaggtaatcttgaaggaatataagcatgcctctacaaagtgacttcataaaccaaaatatcaagttttccaccaataaat 46010482  T
Q  112 cctttggtttctatggttgatttgattcattcctatttaaaaacaaggaaaatgttaactagtacctgagggcattgcttaaggactttaaatggtaaca 211  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  46010483 cctttggtttctatggttgatttgattcattcccatttaaaaataaggaaaatgttaactagtgcccgagggcattgcttaaggactttaaatggtaaca 46010582  T
Q  212 ttttataaaagtttatgtaataaagtacgtcagaaattgtaaactttaacttt 264  Q
    ||||||||||||||||||||||||| |||||||||||| |||| |||||||||    
T  46010583 ttttataaaagtttatgtaataaagcacgtcagaaattataaattttaacttt 46010635  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 39724064 - 39724112
Alignment:
Q  190 ttaaggactttaaatggtaacattttataaaagtttatgtaataaagta 238  Q
    ||||| |||||||||||||| ||||||||||||||| | ||||||||||    
T  39724064 ttaagaactttaaatggtaatattttataaaagtttgtataataaagta 39724112  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 21687591 - 21687630
Alignment:
Q  198 tttaaatggtaacattttataaaagtttatgtaataaagt 237  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  21687591 tttaaatggtaactttttataaaagtttgtgtaataaagt 21687630  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 23614724 - 23614677
Alignment:
Q  190 ttaaggactttaaatggtaacattttataaaagtttatgtaataaagt 237  Q
    |||| ||||||||| | ||| |||||||||||||||||||||||||||    
T  23614724 ttaaagactttaaacgataatattttataaaagtttatgtaataaagt 23614677  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 53261666 - 53261624
Alignment:
Q  190 ttaaggactttaaatggtaacattttataaaagtttatgtaat 232  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||    
T  53261666 ttaaggactttaaatagtaactttttataaaagtttgtgtaat 53261624  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 31844185 - 31844250
Alignment:
Q  161 aaatgttaactagtacctg-agggcattgcttaaggactttaaatggtaacattttataaaagttt 225  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||| ||||| |||||| |||||||    
T  31844185 aaatgttaactagtacctccagggcattggttaaggactttaaatagtaactttttatgaaagttt 31844250  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 1876450 - 1876522
Alignment:
Q  161 aaatgttaactagtacctga-gggcattgcttaaggactttaaatggtaacattttataaaagtttatgtaat 232  Q
    |||||||||||||| |||   |||||||| ||||||||||||||||||||  |||||| ||||||| ||||||    
T  1876450 aaatgttaactagtgcctcctgggcattggttaaggactttaaatggtaattttttatgaaagtttgtgtaat 1876522  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 34722775 - 34722822
Alignment:
Q  190 ttaaggactttaaatggtaacattttataaaagtttatgtaataaagt 237  Q
    ||||||||||||||||||||| |||||| ||||||| | |||||||||    
T  34722775 ttaaggactttaaatggtaactttttatgaaagtttgtataataaagt 34722822  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 1445137 - 1445178
Alignment:
Q  196 actttaaatggtaacattttataaaagtttatgtaataaagt 237  Q
    ||||||||||||||| |||| ||||||||| |||||||||||    
T  1445137 actttaaatggtaactttttctaaaagtttgtgtaataaagt 1445178  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 36907907 - 36907866
Alignment:
Q  191 taaggactttaaatggtaacattttataaaagtttatgtaat 232  Q
    |||||||||||||| ||||| |||||||||||||| ||||||    
T  36907907 taaggactttaaatagtaactttttataaaagtttgtgtaat 36907866  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 29716753 - 29716830
Alignment:
Q  181 gggcattgcttaaggactttaaatggtaacattttataaaagtttatgtaataaagtacgtcagaaattgtaaacttt 258  Q
    ||||| || ||||||||||||||||||||| |||||| ||||||| ||||||||||| | |  ||||||| |||||||    
T  29716753 gggcactggttaaggactttaaatggtaaccttttatgaaagtttgtgtaataaagtgcattggaaattgaaaacttt 29716830  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 23344674 - 23344633
Alignment:
Q  196 actttaaatggtaacattttataaaagtttatgtaataaagt 237  Q
    ||||||||||||||| |||||||||||||| |||||||||||    
T  23344674 actttaaatggtaactttttataaaagtttgtgtaataaagt 23344633  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 20821412 - 20821365
Alignment:
Q  190 ttaaggactttaaatggtaacattttataaaagtttatgtaataaagt 237  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  20821412 ttaaggactttaaatggtaactttttatgaaagtttgtgtaataaagt 20821365  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 39652034 - 39651982
Alignment:
Q  181 gggcattgcttaaggactttaaatggtaacattttataaaagtttatgtaata 233  Q
    |||||||  ||||||||||||||||||||| |||||| ||||||  |||||||    
T  39652034 gggcattagttaaggactttaaatggtaactttttatgaaagttactgtaata 39651982  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 7432743 - 7432698
Alignment:
Q  192 aaggactttaaatggtaacattttataaaagtttatgtaataaagt 237  Q
    ||||||||||||||||||| |||||||||||||| || ||||||||    
T  7432743 aaggactttaaatggtaactttttataaaagtttgtgcaataaagt 7432698  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 43492169 - 43492263
Alignment:
Q  161 aaatgttaactagtacctgaggg-cattgcttaaggactttaaatggtaacattttataaaagtttatgtaataaagtacgtcagaaattgtaaa 254  Q
    |||||||||||||| |||  ||| || || ||||||  ||||||||||||| |||||| ||||||| ||||||||||| | |  |||||||||||    
T  43492169 aaatgttaactagtgcctccggggcactgattaagggatttaaatggtaactttttattaaagtttgtgtaataaagtgcattggaaattgtaaa 43492263  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 431622 - 431678
Alignment:
Q  181 gggcattgcttaaggactttaaatggtaacattttataaaagtttatgtaataaagt 237  Q
    |||||||| |||| |||||||||||||||| |||||| ||||||| ||||| |||||    
T  431622 gggcattggttaaagactttaaatggtaactttttatgaaagtttgtgtaaaaaagt 431678  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 11385567 - 11385514
Alignment:
Q  184 cattgcttaaggactttaaatggtaacattttataaaagtttatgtaataaagt 237  Q
    ||||| ||||||| |||||||| |||| |||||||||||||| ||| |||||||    
T  11385567 cattgattaaggattttaaatgataactttttataaaagtttgtgttataaagt 11385514  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 16636661 - 16636703
Alignment:
Q  190 ttaaggactttaaatggtaacattttataaaagtttatgtaat 232  Q
    |||||||| |||||||||||| |||||||||||||| ||||||    
T  16636661 ttaaggaccttaaatggtaactttttataaaagtttgtgtaat 16636703  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 27794827 - 27794892
Alignment:
Q  159 gaaaatgttaactagtacctgagggcattgcttaaggactttaaatggtaacattttataaaagttt 225  Q
    |||||||||||||||| |||  || ||||  ||||||||||||||||||||  ||||||||||||||    
T  27794827 gaaaatgttaactagtgcctc-ggacattagttaaggactttaaatggtaattttttataaaagttt 27794892  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 38172753 - 38172711
Alignment:
Q  190 ttaaggactttaaatggtaacattttataaaagtttatgtaat 232  Q
    |||||||||||||||| |||| |||||||||||||| ||||||    
T  38172753 ttaaggactttaaatgataactttttataaaagtttgtgtaat 38172711  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 32169412 - 32169448
Alignment:
Q  195 gactttaaatggtaacattttataaaagtttatgtaa 231  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  32169412 gactttaaatgataacattgtataaaagtttatgtaa 32169448  T

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