View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7357_high_2 (Length: 340)

Name: NF7357_high_2
Description: NF7357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7357_high_2
NF7357_high_2
[»] chr2 (8 HSPs)
chr2 (65-131)||(16431894-16431960)
chr2 (70-131)||(37259671-37259732)
chr2 (73-131)||(17692637-17692695)
chr2 (70-131)||(14805574-14805635)
chr2 (136-212)||(43667864-43667939)
chr2 (84-131)||(15332776-15332823)
chr2 (70-131)||(7091132-7091193)
chr2 (70-131)||(33751506-33751567)
[»] chr1 (5 HSPs)
chr1 (253-307)||(18243515-18243569)
chr1 (159-212)||(18238122-18238175)
chr1 (69-131)||(45346263-45346325)
chr1 (68-131)||(12983563-12983626)
chr1 (224-260)||(18239414-18239450)
[»] chr8 (2 HSPs)
chr8 (68-131)||(533727-533790)
chr8 (64-131)||(13800634-13800701)
[»] scaffold0166 (1 HSPs)
scaffold0166 (70-131)||(25092-25153)
[»] chr7 (3 HSPs)
chr7 (70-131)||(45974466-45974527)
chr7 (69-131)||(29245295-29245357)
chr7 (70-131)||(6444184-6444245)
[»] chr5 (2 HSPs)
chr5 (70-131)||(24782709-24782770)
chr5 (67-131)||(41405989-41406053)
[»] chr4 (3 HSPs)
chr4 (69-131)||(20135454-20135516)
chr4 (74-131)||(55917405-55917462)
chr4 (63-131)||(28683098-28683165)
[»] chr3 (2 HSPs)
chr3 (70-131)||(39831201-39831262)
chr3 (67-131)||(29835801-29835865)
[»] scaffold0896 (1 HSPs)
scaffold0896 (61-131)||(1969-2039)
[»] chr6 (1 HSPs)
chr6 (61-131)||(7124325-7124395)


Alignment Details
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 16431960 - 16431894
Alignment:
Q  65 aaatagggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    |||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||    
T  16431960 aaatagggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaata 16431894  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 37259671 - 37259732
Alignment:
Q  70 gggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||    
T  37259671 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaata 37259732  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 17692695 - 17692637
Alignment:
Q  73 aaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    |||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||    
T  17692695 aaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaata 17692637  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 14805574 - 14805635
Alignment:
Q  70 gggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||||||||||||||||| |||| || | |||||||||||| |||||||||||||||||    
T  14805574 gggaaattctatggtgaagtcattaaattgaatttttcagagaagttatcctacatccaata 14805635  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 43667864 - 43667939
Alignment:
Q  136 attcatcactttttaatgtaaaaccaaatggggagtagatatggttaccttttatccaccaaaaaataaattaacta 212  Q
    ||||||||||||| |||||| | ||||||||| ||| |   ||||||||||||||||||| || |||||||||||||    
T  43667864 attcatcacttttgaatgtagagccaaatgggtagtggcagtggttaccttttatccacc-aacaataaattaacta 43667939  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 15332823 - 15332776
Alignment:
Q  84 tgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||| |||| || |||||||||||||| |||||||||||||||||    
T  15332823 tgaagtcattaaattgactttttcagagaagttatcctacatccaata 15332776  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 7091193 - 7091132
Alignment:
Q  70 gggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||||||||||||||||| || | || |||||||| | ||| ||| |||||||||||||    
T  7091193 gggaaattctatggtgaagtcgttcaattgactttttcggtgaagttaccctacatccaata 7091132  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 33751506 - 33751567
Alignment:
Q  70 gggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||||||||||||||||| || | || |||||||| | ||| ||| |||||||||||||    
T  33751506 gggaaattctatggtgaagtcgttcaattgactttttcggtgaagttaccctacatccaata 33751567  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 18243515 - 18243569
Alignment:
Q  253 gaataaaatagtacatgttagattattgggcctaatatctggtgcggttcttcat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18243515 gaataaaatagtacatgttagattattgggcctaatatctggtgcggttcatcat 18243569  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 18238122 - 18238175
Alignment:
Q  159 ccaaatggggagtagatatggttaccttttatccaccaaaaaataaattaacta 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18238122 ccaaatggggagtagatatggttaccttttatccaccaagaaataaattaacta 18238175  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 45346263 - 45346325
Alignment:
Q  69 agggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    |||||||||||| ||||||||| |||| || |||||||||||||| |||||||||||||||||    
T  45346263 agggaaattctacggtgaagtcattaaattgactttttcagagaagttatcctacatccaata 45346325  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 12983626 - 12983563
Alignment:
Q  68 tagggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    |||||||||||||||||||||||  ||| || |||||||||||||| ||||||||||| |||||    
T  12983626 tagggaaattctatggtgaagtcaataaattgactttttcagagaagttatcctacattcaata 12983563  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 18239414 - 18239450
Alignment:
Q  224 atatacatatttacaatgacaattgaccagaataaaa 260  Q
    |||||||||||||||||||||||||||||||||||||    
T  18239414 atatacatatttacaatgacaattgaccagaataaaa 18239450  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 533790 - 533727
Alignment:
Q  68 tagggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||    
T  533790 tagggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaata 533727  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 13800634 - 13800701
Alignment:
Q  64 aaaatagggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||||||||||||||||||||||| || | || |||||||||| ||| |||  ||||||||||||    
T  13800634 aaaatagggaaattctatggtgaagtcattcaattgactttttcagtgaagttactctacatccaata 13800701  T

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Target: scaffold0166 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 25092 - 25153
Alignment:
Q  70 gggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||    
T  25092 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaata 25153  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 45974527 - 45974466
Alignment:
Q  70 gggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||    
T  45974527 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaata 45974466  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 29245357 - 29245295
Alignment:
Q  69 agggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    |||||||||||||||||||||  |||| || |||||||||||||| |||||||||||||||||    
T  29245357 agggaaattctatggtgaagttattaaattgactttttcagagaagttatcctacatccaata 29245295  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 6444245 - 6444184
Alignment:
Q  70 gggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||||||||||||||||| || | || |||||||| | ||| ||||||||||| |||||    
T  6444245 gggaaattctatggtgaagtcattcaattgactttttcggtgaagttatcctacattcaata 6444184  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 24782709 - 24782770
Alignment:
Q  70 gggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||    
T  24782709 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaata 24782770  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 41405989 - 41406053
Alignment:
Q  67 atagggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    |||||||||||||||||||||||  || | || ||||||||   ||| |||||||||||||||||    
T  41405989 atagggaaattctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaata 41406053  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 20135516 - 20135454
Alignment:
Q  69 agggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    |||||||||||||||||||||| |||| || |||||||||||| | |||||||||||||||||    
T  20135516 agggaaattctatggtgaagtcattaaattgactttttcagagcagttatcctacatccaata 20135454  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 55917405 - 55917462
Alignment:
Q  74 aattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||||||||||||| |||| || |||||||||||||| ||||||||||| |||||    
T  55917405 aattctatggtgaagtcattaaattgactttttcagagaagttatcctacattcaata 55917462  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 28683165 - 28683098
Alignment:
Q  63 aaaaatagggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    |||| |||| ||||||||||||||||||||||| || || ||||| | ||| |||||||||||||||||    
T  28683165 aaaactaggaaaattctatggtgaagtccttaaattgac-ttttcggtgaagttatcctacatccaata 28683098  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 39831201 - 39831262
Alignment:
Q  70 gggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    ||||||||||||||||||||| |||| || |||||||||||| | |||||||||||||||||    
T  39831201 gggaaattctatggtgaagtcattaaattgactttttcagagcagttatcctacatccaata 39831262  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 29835865 - 29835801
Alignment:
Q  67 atagggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    |||||||||||||||||||||||| || | || |||||||||| ||| ||| |||||||||||||    
T  29835865 atagggaaattctatggtgaagtcattcaattgactttttcagtgaagttaccctacatccaata 29835801  T

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Target: scaffold0896 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 2039 - 1969
Alignment:
Q  61 ataaaaatagggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    |||||| ||||||||||||| ||||||||| || | || |||||||||| ||| ||||||||||| |||||    
T  2039 ataaaactagggaaattctacggtgaagtcattcaattgactttttcagtgaagttatcctacattcaata 1969  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 7124325 - 7124395
Alignment:
Q  61 ataaaaatagggaaattctatggtgaagtccttaatttaactttttcagagaaattatcctacatccaata 131  Q
    |||||| ||||||||||||| ||||||||| || | || |||||||||| ||| ||||||||||| |||||    
T  7124325 ataaaactagggaaattctacggtgaagtcattcaattgactttttcagtgaagttatcctacattcaata 7124395  T

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