View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7357_high_8 (Length: 222)

Name: NF7357_high_8
Description: NF7357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7357_high_8
NF7357_high_8
[»] chr2 (5 HSPs)
chr2 (16-206)||(28178857-28179044)
chr2 (124-184)||(28160364-28160424)
chr2 (16-49)||(28171094-28171127)
chr2 (55-122)||(28169010-28169078)
chr2 (140-183)||(28177153-28177196)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 28178857 - 28179044
Alignment:
Q  16 ttctccctgaagattccaacaatgccctcaaggtaggtagtggcatcataatcaaataacaaaaatgaacttattatatatgtatgtatagtgaaaagga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  28178857 ttctccctgaagattccaacaatgccctcaaggtaggtagtggcatcataatcaaataacaaaaatgaacttatg---tatgtatgtatagtgaaaagga 28178953  T
Q  116 gaatcaatctgtaccaaaaagattaatggttcaattatgatattgattgtctaataactcactttctttggtttattttgtctcttgttat 206  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28178954 gaatcaatctgtaccaaaaggattaatggttcaattctgatattgattgtctaataactcactttctttggtttattttgtctcttgttat 28179044  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 28160364 - 28160424
Alignment:
Q  124 ctgtaccaaaaagattaatggttcaattatgatattgattgtctaataactcactttcttt 184  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  28160364 ctgtaccaaaaagcttaatggttcaattaggatattgattgtctaataactcacttccttt 28160424  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 28171094 - 28171127
Alignment:
Q  16 ttctccctgaagattccaacaatgccctcaaggt 49  Q
    ||||||||||||||||||||||||||||||||||    
T  28171094 ttctccctgaagattccaacaatgccctcaaggt 28171127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 28169010 - 28169078
Alignment:
Q  55 gtggcatcataatcaaataacaaaaatgaacttattata-tatgtatgtatagtgaaaaggagaatcaa 122  Q
    ||||||| |||||||||||||||||| || | |||  |  |||||||||||||||||||||||||||||    
T  28169010 gtggcattataatcaaataacaaaaacgatcctatgcttgtatgtatgtatagtgaaaaggagaatcaa 28169078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 28177153 - 28177196
Alignment:
Q  140 aatggttcaattatgatattgattgtctaataactcactttctt 183  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||    
T  28177153 aatggttcaattaggatattggttgtctaataacacactttctt 28177196  T

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