View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7357_low_1 (Length: 619)
Name: NF7357_low_1
Description: NF7357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7357_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 17 - 575
Target Start/End: Original strand, 35899422 - 35899981
Alignment:
| Q |
17 |
catcaatatccatcaccatatgttgagacgacccaaaccggtcgagttgtgggccaacgactgtagcagcaggagagccgacctgagaagatgagcctgt |
116 |
Q |
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| T |
35899422 |
catcaatatccatcaccatatgttgagactacccaaaccggtcgagttgtgggccaacggctgtagcagcaggagagccgacctgagaagatgagcctgt |
35899521 |
T |
|
| Q |
117 |
agccctagccaagagcgcgttgagactgcgagggtccttcctctttgacccagtcgaccaaactccaggcttcatacttagtttcttcagcttttcttgt |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35899522 |
agccctagccaagagcgcgttgagaccgcgagggtccttcctctttgacccagtcgaccaaactccaggcttcatacttagtttcttcagcttttcttgt |
35899621 |
T |
|
| Q |
217 |
agtccagccatgttaacttcaaacgagaaaacaacgaaatcagtaaataaatcgtcaaatcaaatataagcacaagtaaatcttaaagattacctaacaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35899622 |
agtccagccatgttaacttcaaacgagaaaacaacgaaatcagtaaataaatcgtcaaatcaaatataagcacaagtaaatcttaaagattacctaacaa |
35899721 |
T |
|
| Q |
317 |
acccctcgggtctgaagacttaacaaggtccttggtgttgataaaacgatcctcgttaaatgggtttccctcaagtcgtatagaacgtttccgtgctcat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35899722 |
acccctcgggtctgaagacttaacaaggtccttggtgttgataaaacgatcctcgttaaatgggtttccctcaagtcgtatagaacgtttccatgctcat |
35899821 |
T |
|
| Q |
417 |
ccacacaggtataaggcgtttcctctgcctaaacaagccttcgcttgctgctttactatggatgctgtcaaaatacttgcctctggctttgattgtccat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35899822 |
ccacacaggtataaggcgtttcctctgcctaaacaagccttcgcttgctgctttactatggatgctatcaaaatacttgcctctggctttgattgtccat |
35899921 |
T |
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| Q |
517 |
gtttgcatgttccaatactctta-ggcgtgtcgcaagttgctttttgaagggtattttaa |
575 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35899922 |
gtttgcatgttccaatactcttacggcgtgtcgcaagttgctttttgaagggtattttaa |
35899981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 452 - 509
Target Start/End: Original strand, 35882031 - 35882088
Alignment:
| Q |
452 |
agccttcgcttgctgctttactatggatgctgtcaaaatacttgcctctggctttgat |
509 |
Q |
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||||||| |||||||||| |||||||| |||||||||||||| |||| |||||||||| |
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| T |
35882031 |
agccttcacttgctgcttaactatggaggctgtcaaaatactcgcctatggctttgat |
35882088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 438 - 508
Target Start/End: Complemental strand, 10212221 - 10212151
Alignment:
| Q |
438 |
cctctgcctaaacaagccttcgcttgctgctttactatggatgctgtcaaaatacttgcctctggctttga |
508 |
Q |
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|||||||||||||||| |||| | || |||||||||||||||| ||||||||| || || ||||||||||| |
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| T |
10212221 |
cctctgcctaaacaaggcttcacatgttgctttactatggatggtgtcaaaatcctcgcttctggctttga |
10212151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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