View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7357_low_12 (Length: 238)

Name: NF7357_low_12
Description: NF7357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7357_low_12
NF7357_low_12
[»] chr1 (4 HSPs)
chr1 (20-224)||(38709717-38709921)
chr1 (20-212)||(4391386-4391575)
chr1 (28-102)||(39908942-39909016)
chr1 (25-152)||(38564742-38564865)
[»] chr3 (4 HSPs)
chr3 (28-206)||(16284849-16285026)
chr3 (28-212)||(17324278-17324463)
chr3 (28-181)||(45181401-45181554)
chr3 (28-181)||(2782190-2782343)
[»] chr2 (4 HSPs)
chr2 (39-212)||(4397562-4397733)
chr2 (28-180)||(37129044-37129196)
chr2 (28-176)||(42048337-42048485)
chr2 (28-120)||(41958100-41958193)
[»] chr4 (6 HSPs)
chr4 (28-212)||(26500396-26500584)
chr4 (28-212)||(1798928-1799106)
chr4 (29-148)||(23040625-23040744)
chr4 (28-186)||(10388369-10388521)
chr4 (28-152)||(17416630-17416754)
chr4 (28-144)||(40813902-40814017)
[»] chr8 (4 HSPs)
chr8 (35-184)||(46355-46505)
chr8 (20-212)||(38387689-38387886)
chr8 (28-211)||(1578918-1579098)
chr8 (77-181)||(31179995-31180098)
[»] chr7 (3 HSPs)
chr7 (20-187)||(2569962-2570128)
chr7 (28-147)||(46262240-46262357)
chr7 (25-138)||(25153081-25153193)
[»] chr5 (7 HSPs)
chr5 (28-147)||(35846938-35847057)
chr5 (85-216)||(39368686-39368815)
chr5 (31-161)||(29685654-29685783)
chr5 (28-133)||(42742456-42742561)
chr5 (33-95)||(3204173-3204235)
chr5 (99-181)||(25341507-25341588)
chr5 (29-86)||(2706963-2707020)
[»] chr6 (1 HSPs)
chr6 (46-152)||(12129057-12129162)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 38709921 - 38709717
Alignment:
Q  20 cagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38709921 cagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaac 38709822  T
Q  120 cagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacaccccaaccctcggctaggcaagta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||    
T  38709821 cagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccagcacacaccccagccctcggctaggcaacta 38709722  T
Q  220 caaac 224  Q
    |||||    
T  38709721 caaac 38709717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 4391575 - 4391386
Alignment:
Q  20 cagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaac 119  Q
    ||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||    
T  4391575 cagaacagacaccttaacctgaccaaaacctcgacccaccaagaacccgatgccaaaatccaaagacagagaaaaggcggaatagtagcacaaagcaaac 4391476  T
Q  120 cagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacaccccaaccctcggctag 212  Q
    || ||| |||| ||||   |||||||||||  ||| |||| ||| | |||||||||||||||||||||  | ||| ||||||||||| |||||    
T  4391475 catctcgaacataaac---tcaaaacaagcacccaaatcatcctacatcaccaccacctgaatagaccggcgcacgccccaaccctcagctag 4391386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 39908942 - 39909016
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaac 102  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  39908942 acacctaaacctgtccaaaaactcgatccaccaataacccgatgccaaaatccaaagacagagaaaaggtggaac 39909016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 38564865 - 38564742
Alignment:
Q  25 caaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagct 124  Q
    ||||||||| ||||||||||||  |||| |||||||| | || ||||||||| ||| ||||| ||||| ||| |||| || ||| |||| | ||||||||    
T  38564865 caaacacctaaacctgtccaaa--ctcg-cccaccaaaatcctgatgccaaa-ttcgaagacggagaacaggtggaatagcagcacaaaacgaaccagct 38564770  T
Q  125 caaacacaaacaaatcaaaacaagccac 152  Q
    | |||  ||||| || ||||||||||||    
T  38564769 cgaacctaaacatatgaaaacaagccac 38564742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 206
Target Start/End: Complemental strand, 16285026 - 16284849
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |||||| || |||||||| ||||||  ||||||||| |    
T  16285026 acaccttaacctgtccaaaaactcgacccaccaatagctcgatgccaaaat-caaagacagcgaaaagacgaaacagtagtgcaaagtgaaccagctcga 16284928  T
Q  128 acacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacaccccaaccctc 206  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||  | |||||||||||||||    
T  16284927 acacaaacaaatcaaaacaagccaccaaatcaacctgcatcaccaccacatgaatagaccggcgcacaccccaaccctc 16284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 17324278 - 17324463
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||||| | |||||||||||| |||||| |||||| ||||||||| |    
T  17324278 acacctaaacctatccaaaaactcgacccaccaataacccgatgtcaaaatccaaagacggggaaaaggcggaatagtagcacaaagcgaaccagctcga 17324377  T
Q  128 acacaaacaaatcaaaacaagcc-accatatcaacctgcgtcaccaccacctgaatagaccaacacacaccccaaccctcggctag 212  Q
    ||||||||||||||||||||||| |||| |||||||||| |||||||||| ||||||||||  | | ||||||||||||| |||||    
T  17324378 acacaaacaaatcaaaacaagccaaccaaatcaacctgcatcaccaccacttgaatagacctgcgctcaccccaaccctcagctag 17324463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 45181554 - 45181401
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||| ||||||||||| | ||||| ||| |    
T  45181554 acaccctaacctgtccaaaaactcgacccaccaataacccaatgccaaaatccaaagacagaaaaaaggtggaatagtagcgcaaaacgaaccaactcga 45181455  T
Q  128 acacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaa 181  Q
    ||||||||||| |||| |||||||||| |||||  ||| |||||||||||||||    
T  45181454 acacaaacaaaacaaaccaagccaccaaatcaatatgcatcaccaccacctgaa 45181401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 2782190 - 2782343
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    ||||||||||||||||||||||||| ||||||| || |  ||||||||| |   ||| || |||||||| ||||||  |||||||| | ||||||||| |    
T  2782190 acaccttaacctgtccaaaaactcggcccaccattatctagatgccaaattcgtaagccaaagaaaaggtggaacaacagcgcaaatcgaaccagctcga 2782289  T
Q  128 acacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaa 181  Q
     || ||||||| |||| ||||| || | ||||| |||| |||||||||| ||||    
T  2782290 gcataaacaaaccaaatcaagctacaaaatcaaactgcatcaccaccacttgaa 2782343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 4397562 - 4397733
Alignment:
Q  39 tgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaa 138  Q
    ||||||||||||||||||||||||||| | |||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||    
T  4397562 tgtccaaaaactcgacccaccaataactctatgccaaaatccaaagacagagaaa-ggcggaacagtagcgcaaagcgaac-agctcgaacacaaacaaa 4397659  T
Q  139 tcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacaccccaaccctcggctag 212  Q
    |||||||||||||||| |||||||||| ||||||||||| ||| |||||  | |||||||||||||||||||||    
T  4397660 tcaaaacaagccaccaaatcaacctgcatcaccaccaccagaaaagaccggcgcacaccccaaccctcggctag 4397733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 37129044 - 37129196
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    |||||| ||||||||||||||||| ||| ||||| || |||||| |||||| |||||||||| |||||||||||||||||||| || | ||||||||| |    
T  37129044 acacctgaacctgtccaaaaactcaaccaaccaaaaatccgatgtcaaaatccaaagacagaaaaaaggcggaacagtagcgccaaacgaaccagctcga 37129143  T
Q  128 acacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctga 180  Q
    ||||||||||||||||| || |||||| | |   |||| ||||||||||||||    
T  37129144 acacaaacaaatcaaaataatccaccaaaaccgtctgcatcaccaccacctga 37129196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 42048337 - 42048485
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    |||||||||| |||||||||||||| ||||||| || || || |||||| | | |||||||||  |||| ||||||  |  ||||| | ||||||||| |    
T  42048337 acaccttaacatgtccaaaaactcggcccaccattatccagaggccaaattcctaagacagagggaaggtggaacaacaatgcaaatcgaaccagctcga 42048436  T
Q  128 acacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccac 176  Q
    ||| ||||||| ||||||||||||| | |||||| ||| || |||||||    
T  42048437 acataaacaaaccaaaacaagccacaaaatcaacatgcatcgccaccac 42048485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 41958193 - 41958100
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaata--acccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaacc 120  Q
    |||||||||||||||||||||  | ||||| |||||  ||||||||||||||| | ||||||||| |||||  ||||| ||||||||||| ||||    
T  41958193 acaccttaacctgtccaaaaatccaacccatcaatataacccgatgccaaaatccgaagacagag-aaaggtagaacattagcgcaaagcgaacc 41958100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 26500396 - 26500584
Alignment:
Q  28 acaccttaacctgtccaaaaa--ctcgacccac--caataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagc 123  Q
    |||||||||||||||||||||  ||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||  ||| |||||| || ||||    
T  26500396 acaccttaacctgtccaaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcggaacaaaagcacaaagcgaatcagc 26500495  T
Q  124 tcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacaccccaaccctcggctag 212  Q
    || |||| ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| || || |||||||||||| |||||    
T  26500496 tcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgcaacaccaccacctgaatagaccgacgcaaaccccaaccctcagctag 26500584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 1799106 - 1798928
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||  ||||||||| |    
T  1799106 acaccttaacctatccaaaaactcgacccaccaataacccgatgccaaaatccaaagacagagaaaaggcagaacaatagcgcaaagtgaaccagctcga 1799007  T
Q  128 acacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacaccccaaccctcggctag 212  Q
    ||||||      |||||| |||||||| | |||||||| ||||||||||||||||||| |  | |||||||||||||||||||||    
T  1799006 acacaa------caaaaccagccaccaaaacaacctgcatcaccaccacctgaatagatcggcgcacaccccaaccctcggctag 1798928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 23040625 - 23040744
Alignment:
Q  29 caccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaa 128  Q
    |||||||||||||| ||||||||||||| |||| || ||||||||||||| || ||||||||||||| ||||||||||||||||||| ||||||||| ||    
T  23040625 caccttaacctgtctaaaaactcgaccctccaaaaatccgatgccaaaatccatagacagagaaaagacggaacagtagcgcaaagcgaaccagctcgaa 23040724  T
Q  129 cacaaacaaatcaaaacaag 148  Q
    |||||| |||||||||||||    
T  23040725 cacaaataaatcaaaacaag 23040744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 10388521 - 10388369
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    ||||||| || ||||| |||||| |||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||  |         
T  10388521 acacctttacatgtcccaaaacttgacccatcaataacccgatgccaaaatccaaagagagagaaaaggcggaacagtagcgcaaagcgaacggg----- 10388427  T
Q  128 acacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagac 186  Q
     ||||||| || ||||| || |||||| |||||||||| ||||||||||||||||||||    
T  10388426 -cacaaactaaccaaaaaaatccaccaaatcaacctgcatcaccaccacctgaatagac 10388369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 17416630 - 17416754
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    ||||||||||||||||||||||||| ||||| |  ||||  |||||||| | | ||||||||||||||| | |||| ||||||||||| ||||||||| |    
T  17416630 acaccttaacctgtccaaaaactcggcccacaataaaccaaatgccaaattcctaagacagagaaaaggtgaaacaatagcgcaaagcgaaccagctcga 17416729  T
Q  128 acacaaacaaatcaaaacaagccac 152  Q
    |||||||||||||||||||||||||    
T  17416730 acacaaacaaatcaaaacaagccac 17416754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 40813902 - 40814017
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    |||||||||||| |||||||||||| |||||||  |||| ||||||||| ||| ||| ||||||||||| |||||||||||||||| | ||||||||| |    
T  40813902 acaccttaacctatccaaaaactcggcccaccataaaccagatgccaaa-ttcgaaggcagagaaaaggtggaacagtagcgcaaaacgaaccagctcga 40814000  T
Q  128 acacaaacaaatcaaaa 144  Q
    | | ||||||| |||||    
T  40814001 atataaacaaaccaaaa 40814017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 35 - 184
Target Start/End: Original strand, 46355 - 46505
Alignment:
Q  35 aacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaa 134  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| ||||||||||||||| |||||| |||| |||| ||||||||    
T  46355 aacctgtccaaaaactcgacccaccaataacccgatgtcaaaatccaaagacaaagaataggcggaacagtagcacaaagcgaaccggctcgaacacaaa 46454  T
Q  135 caaatcaaaacaagcc-accatatcaacctgcgtcaccaccacctgaatag 184  Q
    |||||||||||||||| |||| |||||||||| |||||||||| |||||||    
T  46455 caaatcaaaacaagccaaccaaatcaacctgcatcaccaccacttgaatag 46505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 38387886 - 38387689
Alignment:
Q  20 cagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaac 119  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||| | |||||| ||| ||||||| |||    
T  38387886 cagagcaaacaccttaacctgtccaaaaactcgacccaccaataacctgatggcaaaatccaaagatagagaaaatggggaacaatagtgcaaagcgaac 38387787  T
Q  120 cagctcaaacacaaa-----caaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacaccccaaccctcggctag 212  Q
    |||||| ||||||||     |||| ||||||||||||||| | ||||||||   |||||||||| ||||||||  | |||||||||||||||||||||    
T  38387786 cagctcgaacacaaacaaaacaaaacaaaacaagccaccaaaccaacctgcaagaccaccacctaaatagaccggcgcacaccccaaccctcggctag 38387689  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 1579098 - 1578918
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    |||||| ||||| ||||||| || ||||| |||| ||| |||||||||||| ||||||||||||| | || ||| ||||||||||||| || || ||| |    
T  1579098 acacctaaacctatccaaaaccttgacccgccaagaacacgatgccaaaatccaaagacagagaacaagcagaatagtagcgcaaagcgaatcaactcga 1578999  T
Q  128 acacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagaccaacacacaccccaaccctcggcta 211  Q
    ||||||||   ||||| |||||||||| ||||  |||| ||| ||||||| ||||  |||  | ||| ||||||||||||||||    
T  1578998 acacaaac---tcaaatcaagccaccaaatcactctgcatcagcaccacccgaattaaccggcgcacgccccaaccctcggcta 1578918  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 31179995 - 31180098
Alignment:
Q  77 attcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccac 176  Q
    |||||||| ||||||||||| ||| || ||||| ||| | || |||||  |||||||||||| ||||||||||||  | |||||||||| ||||||||||    
T  31179995 attcaaaggcagagaaaaggtggagcaatagcgaaaatcgaaacagcttgaacacaaacaaa-caaaacaagccatgaaatcaacctgcatcaccaccac 31180093  T
Q  177 ctgaa 181  Q
     ||||    
T  31180094 ttgaa 31180098  T

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Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 2570128 - 2569962
Alignment:
Q  20 cagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaac 119  Q
    |||| |||||||||||| ||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||    
T  2570128 cagagcaaacaccttaatctgaccaaaacctcgacccaccaataacccgatgccaaaatccaaagacagagaaaaggcggatcagtagcacaaagcgaac 2570029  T
Q  120 cagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatagacc 187  Q
    |||||| ||||| ||||||||| ||||| | |||| || ||| ||| |||||||||||||||||||||    
T  2570028 cagctcgaacac-aacaaatcacaacaaactaccaaattaacttgcatcaccaccacctgaatagacc 2569962  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 46262240 - 46262357
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    ||||| ||| || |||||||||||| |||||||| | || ||||||||| |   ||||||||  || || ||||||||||| |||| | | |||||||||    
T  46262240 acaccataaactatccaaaaactcggcccaccaaaacccagatgccaaattgataagacaga--aacggtggaacagtagctcaaatcgatccagctcaa 46262337  T
Q  128 acacaaacaaatcaaaacaa 147  Q
    ||| ||||||| ||||||||    
T  46262338 acaaaaacaaaccaaaacaa 46262357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 25153193 - 25153081
Alignment:
Q  25 caaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagct 124  Q
    ||||||||||||||||||||||||||||  |||||| ||  | |||||| ||||||| | ||| |||| ||| ||||||| | || |||   ||||||||    
T  25153193 caaacaccttaacctgtccaaaaactcggaccaccattattcagatgcc-aaattcataaacatagaataggtggaacagcaacgtaaattgaaccagct 25153095  T
Q  125 caaacacaaacaaa 138  Q
    | |||| |||||||    
T  25153094 cgaacataaacaaa 25153081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 35847057 - 35846938
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||||  ||||| ||||||||| |    
T  35847057 acaccttaacatgtccaaaaacttgacccaccaataacccgatgccaaaatccaaagacaaagaaaaggtggaacaatagcataaagcgaaccagctcga 35846958  T
Q  128 acacaaacaaatcaaaacaa 147  Q
    ||||||||||||||||||||    
T  35846957 acacaaacaaatcaaaacaa 35846938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 39368815 - 39368686
Alignment:
Q  85 acagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaatag 184  Q
    |||||||||||||||||||  |||||| ||||||||||||| ||||||||||  |||||||||||||||| | |||| ||| ||||||||||||||||||    
T  39368815 acagagaaaaggcggaacaaaagcgcacagcaaaccagctcgaacacaaaca--tcaaaacaagccaccaaaacaacttgcatcaccaccacctgaatag 39368718  T
Q  185 accaacacacaccccaaccctcggctaggcaa 216  Q
    |||  | ||||||||||||||| |||||||||    
T  39368717 accggcgcacaccccaaccctcagctaggcaa 39368686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 29685783 - 29685654
Alignment:
Q  31 ccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaaca 130  Q
    ||||||||||| ||||||||| ||||||||||||||  |||||||| | ||||||||||||||||| ||||||||| |||||||  ||||||||| ||||    
T  29685783 ccttaacctgttcaaaaactcaacccaccaataaccatatgccaaattccaaagacagagaaaaggtggaacagtaacgcaaagtgaaccagctcgaaca 29685684  T
Q  131 caaacaaatcaaaacaagccaccatatcaac 161  Q
    ||||| |||||||||||||||| | ||||||    
T  29685683 caaac-aatcaaaacaagccacaaaatcaac 29685654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 42742456 - 42742561
Alignment:
Q  28 acaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaa 127  Q
    |||||| ||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||  | |||||||||||||||| ||| | |||||    
T  42742456 acacctaaacctgttcaaaaacttgacccaccaataacccgatgccaaaatccaaaaacagagaaaagttgaaacagtagcgcaaagccaactaactcaa 42742555  T
Q  128 acacaa 133  Q
    ||||||    
T  42742556 acacaa 42742561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 3204235 - 3204173
Alignment:
Q  33 ttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaag 95  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3204235 ttaacctgaccaaaacctcgacccaccaataacccgatgccaaaattcaaagacagagaaaag 3204173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 25341588 - 25341507
Alignment:
Q  99 gaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcaccaccacctgaa 181  Q
    ||||| ||||||||| | ||||||||| | |||||||||||||||||||||||| | || ||||||| |||||||||| ||||    
T  25341588 gaacaatagcgcaaa-cgaaccagctcgagcacaaacaaatcaaaacaagccacaaaattaacctgcatcaccaccacttgaa 25341507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 2707020 - 2706963
Alignment:
Q  29 caccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagac 86  Q
    ||||||||||||||||| |||||| | ||||||||||| ||||||||| | |||||||    
T  2707020 caccttaacctgtccaagaactcggcacaccaataaccagatgccaaattccaaagac 2706963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 12129162 - 12129057
Alignment:
Q  46 aaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaac 145  Q
    ||||||| ||||||| || |||||||||||| ||| ||||| ||||||||| |||||||| ||||||| ||||||||||| |||| ||||||||||||||    
T  12129162 aaactcggcccaccattatcccgatgccaaa-ttcgaagacggagaaaaggtggaacagtggcgcaaatcaaaccagctcgaacaaaaacaaatcaaaac 12129064  T
Q  146 aagccac 152  Q
    |||||||    
T  12129063 aagccac 12129057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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