View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7357_low_13 (Length: 234)
Name: NF7357_low_13
Description: NF7357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7357_low_13 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 21286872 - 21286645
Alignment:
| Q |
7 |
ttggtggtgcaaatttgaaagtagtagtatcagaaagtggatggccttctcatggtgatgttggtgcatcagttgaaaatgcacaaacctactatgagaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |
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| T |
21286872 |
ttggtggtgcaaatttgaaagtagtagtatcagaaagtggatggccttctcatggtgatgttggtgcatcagttgaaaatgcacaaatctaccacgagaa |
21286773 |
T |
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| Q |
107 |
tttaattaagcatgtttctgtcgggactcctaatcggcctaatcaagcattggaaacttatttatttgccatgtttgatgaaaatcaaaaaggacctgct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21286772 |
tttaattaagcatgtttctgtcgggactcctaatcggcctaatcaagcattggaaacttatttatttgccatgtttgatgaaaatcaaaaaggacctgct |
21286673 |
T |
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| Q |
207 |
gaaacagagaggtattatggtttattta |
234 |
Q |
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| T |
21286672 |
gaaacagagaggtattatggtttattta |
21286645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 13303297 - 13303070
Alignment:
| Q |
7 |
ttggtggtgcaaatttgaaagtagtagtatcagaaagtggatggccttctcatggtgatgttggtgcatcagttgaaaatgcacaaacctactatgagaa |
106 |
Q |
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|||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
13303297 |
ttggaggtgctaatttggaagtagtcatatcagaaagtggatggccttctcatggtgatgttgctgcatcagttgaaaatgcacaaatctactatgagaa |
13303198 |
T |
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| Q |
107 |
tttaattaagcatgtttctgtcgggactcctaatcggcctaatcaagcattggaaacttatttatttgccatgtttgatgaaaatcaaaaaggacctgct |
206 |
Q |
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| T |
13303197 |
tttaattaagcatgtttctaatgggactattagtagacctaatcaagcattagaaacttatttatttgccatgttcgatgaaaataaaaaaggacctgct |
13303098 |
T |
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| Q |
207 |
gaaacagagaggtattatggtttattta |
234 |
Q |
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| T |
13303097 |
gaaatagagagacattacggtttgttta |
13303070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 13431673 - 13431900
Alignment:
| Q |
7 |
ttggtggtgcaaatttgaaagtagtagtatcagaaagtggatggccttctcatggtgatgttggtgcatcagttgaaaatgcacaaacctactatgagaa |
106 |
Q |
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|||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
13431673 |
ttggaggtgctaatttggaagtagtcatatcagaaagtggatggccttctcatggtgatgttgctgcatcagttgaaaatgcacaaatctactatgagaa |
13431772 |
T |
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| Q |
107 |
tttaattaagcatgtttctgtcgggactcctaatcggcctaatcaagcattggaaacttatttatttgccatgtttgatgaaaatcaaaaaggacctgct |
206 |
Q |
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| T |
13431773 |
tttaattaagcatgtttctaatgggactattagtagacctaatcaagcattagaaacttatttatttgccatgttcgatgaaaataaaaaaggacctgct |
13431872 |
T |
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| Q |
207 |
gaaacagagaggtattatggtttattta |
234 |
Q |
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| T |
13431873 |
gaaaaagagagacattacggtttgttta |
13431900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 29288623 - 29288827
Alignment:
| Q |
7 |
ttggtggtgcaaatttgaaagtagtagtatcagaaagtggatggccttctcatggtgatgttggtgcatcagttgaaaatgcacaaacctactatgagaa |
106 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||| |||| ||||||| |
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| T |
29288623 |
ttggtggtgctaatttggaagtagtagtatcagaaagtggatggccttcagatggtggtgttgctgcatcaattgaaaatgcacaaatctaccatgagaa |
29288722 |
T |
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| Q |
107 |
tttaattaagcatgtttctgtcgggactcctaatcggcctaatcaagcattggaaacttatttatttgccatgtttgatgaaaatcaaaaaggacctgct |
206 |
Q |
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||| ||||||||||| | |||||||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||| | |||||||| | | |
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| T |
29288723 |
tttgattaagcatgtgattactgggactcctaataggcctaatcaagcattagagacttacttatttgccatgtttgatgaaaataataaaggaccagat |
29288822 |
T |
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| Q |
207 |
gaaac |
211 |
Q |
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||||| |
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| T |
29288823 |
gaaac |
29288827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 29251461 - 29251495
Alignment:
| Q |
159 |
gaaacttatttatttgccatgtttgatgaaaatca |
193 |
Q |
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| T |
29251461 |
gaaacttatttgtttgccatgtttgatgaaaatca |
29251495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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