View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7357_low_15 (Length: 233)
Name: NF7357_low_15
Description: NF7357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7357_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49623507 - 49623731
Alignment:
| Q |
1 |
tgcattcataacagatgctgccaacaagcacgcttctgctgccaagaaaacaatcctgataacacaataacatatgaactcaaactaaaagccaaaaagt |
100 |
Q |
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| T |
49623507 |
tgcattcataacagatgctgccagcaagcatgcttctgctgccaagaaaacaatcctgataacacaataacatatgaactcaaactaaaagccaaaaaat |
49623606 |
T |
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| Q |
101 |
tcatctcaattata--tatatatttggtctaggtcaaccatcacaataccatatttttaatttcccctttaattaaccatgaacaatctactctttacta |
198 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49623607 |
tcatctcaattatatatatatatttggtctaggtcaaccatcacaataccatatttttaatttcccctttaattaaccatgaacaatctactctttacta |
49623706 |
T |
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| Q |
199 |
aatatgataattggaaagttaccat |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
49623707 |
aatatgataattggaaagttaccat |
49623731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 14335588 - 14335661
Alignment:
| Q |
146 |
accatatttttaatttcccctttaattaaccatgaacaatctactctttactaaatatgataattggaaagttaccat |
223 |
Q |
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|||| ||||||||||||| | ||||||||| |||| ||||||||||||||| || ||||||||||||||||||||| |
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| T |
14335588 |
accacatttttaatttcctccttaattaactatgagcaatctactctttac---at-tgataattggaaagttaccat |
14335661 |
T |
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