View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7357_low_16 (Length: 227)

Name: NF7357_low_16
Description: NF7357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7357_low_16
NF7357_low_16
[»] scaffold0671 (1 HSPs)
scaffold0671 (11-227)||(577-792)
[»] chr1 (18 HSPs)
chr1 (1-227)||(16916673-16916899)
chr1 (1-227)||(24054113-24054338)
chr1 (24-227)||(14781616-14781819)
chr1 (1-225)||(18830618-18830841)
chr1 (1-227)||(727602-727827)
chr1 (1-227)||(23179931-23180155)
chr1 (30-227)||(18736006-18736205)
chr1 (1-227)||(18825790-18826015)
chr1 (32-219)||(25403850-25404036)
chr1 (123-227)||(21987843-21987947)
chr1 (148-227)||(17610130-17610209)
chr1 (117-227)||(29242653-29242761)
chr1 (149-227)||(21449223-21449301)
chr1 (145-227)||(31235920-31236002)
chr1 (148-224)||(12208751-12208826)
chr1 (171-227)||(16179152-16179208)
chr1 (123-219)||(22623045-22623140)
chr1 (147-227)||(32382882-32382960)
[»] chr3 (15 HSPs)
chr3 (1-227)||(20023280-20023505)
chr3 (24-227)||(19167543-19167745)
chr3 (3-227)||(8882852-8883076)
chr3 (24-227)||(12754673-12754876)
chr3 (89-203)||(19909788-19909902)
chr3 (32-227)||(27413655-27413850)
chr3 (3-227)||(16229698-16229907)
chr3 (1-227)||(8170017-8170239)
chr3 (24-227)||(4650372-4650574)
chr3 (145-227)||(17438302-17438383)
chr3 (94-227)||(8770154-8770286)
chr3 (94-227)||(8765252-8765384)
chr3 (24-132)||(19575986-19576094)
chr3 (117-227)||(932889-932998)
chr3 (29-227)||(19925378-19925575)
[»] chr5 (16 HSPs)
chr5 (1-227)||(16523530-16523756)
chr5 (1-227)||(28664908-28665133)
chr5 (1-227)||(17314839-17315065)
chr5 (1-163)||(16523305-16523467)
chr5 (1-227)||(20858819-20859044)
chr5 (29-180)||(19008311-19008462)
chr5 (38-227)||(26835796-26835985)
chr5 (24-101)||(20563881-20563958)
chr5 (24-132)||(23388608-23388716)
chr5 (1-227)||(20549446-20549671)
chr5 (24-227)||(20315180-20315382)
chr5 (2-227)||(24140582-24140806)
chr5 (135-227)||(20563953-20564045)
chr5 (149-227)||(20744545-20744622)
chr5 (117-221)||(34128788-34128892)
chr5 (147-223)||(17432033-17432108)
[»] chr8 (10 HSPs)
chr8 (11-227)||(16404047-16404262)
chr8 (1-227)||(23892941-23893166)
chr8 (1-155)||(19264249-19264402)
chr8 (114-227)||(18569201-18569313)
chr8 (148-227)||(24269743-24269821)
chr8 (148-227)||(13698002-13698078)
chr8 (149-227)||(18448417-18448494)
chr8 (17-87)||(24723356-24723426)
chr8 (147-227)||(13314865-13314945)
chr8 (171-227)||(17101802-17101858)
[»] chr2 (18 HSPs)
chr2 (3-227)||(17198002-17198226)
chr2 (84-227)||(25920399-25920542)
chr2 (1-227)||(25530582-25530808)
chr2 (1-208)||(24090666-24090872)
chr2 (10-227)||(25535408-25535625)
chr2 (24-215)||(26667452-26667643)
chr2 (147-227)||(28925668-28925747)
chr2 (148-227)||(26603234-26603312)
chr2 (148-227)||(27908993-27909071)
chr2 (96-227)||(29143096-29143226)
chr2 (148-227)||(30411813-30411892)
chr2 (148-227)||(25887778-25887856)
chr2 (145-227)||(17349494-17349576)
chr2 (181-227)||(17675536-17675581)
chr2 (145-227)||(29719103-29719185)
chr2 (182-227)||(17635683-17635727)
chr2 (118-227)||(25196157-25196265)
chr2 (171-227)||(25618702-25618757)
[»] chr6 (12 HSPs)
chr6 (1-227)||(23009135-23009360)
chr6 (1-227)||(23779004-23779229)
chr6 (1-227)||(20005645-20005871)
chr6 (1-227)||(22412789-22413014)
chr6 (42-227)||(24657234-24657421)
chr6 (96-227)||(11136042-11136174)
chr6 (147-227)||(27124368-27124447)
chr6 (94-163)||(21841520-21841589)
chr6 (139-227)||(25781924-25782011)
chr6 (148-215)||(14637026-14637093)
chr6 (150-227)||(27737565-27737641)
chr6 (171-227)||(17382215-17382270)
[»] chr4 (11 HSPs)
chr4 (30-221)||(12406459-12406650)
chr4 (1-166)||(11253481-11253646)
chr4 (1-227)||(25097967-25098193)
chr4 (1-227)||(17026071-17026297)
chr4 (1-227)||(25094700-25094926)
chr4 (148-227)||(17337009-17337088)
chr4 (148-227)||(13909000-13909079)
chr4 (149-227)||(24639336-24639414)
chr4 (144-224)||(7582446-7582526)
chr4 (144-227)||(19562045-19562128)
chr4 (24-85)||(4615023-4615083)
[»] scaffold0386 (2 HSPs)
scaffold0386 (1-227)||(5832-6058)
scaffold0386 (29-227)||(6470-6668)
[»] chr7 (19 HSPs)
chr7 (1-223)||(13289152-13289368)
chr7 (1-227)||(4449114-4449339)
chr7 (1-227)||(17190942-17191167)
chr7 (29-227)||(13277638-13277835)
chr7 (12-154)||(22066985-22067127)
chr7 (94-227)||(16058853-16058986)
chr7 (24-87)||(16058763-16058826)
chr7 (63-227)||(13418668-13418831)
chr7 (94-227)||(20582402-20582534)
chr7 (151-227)||(1848105-1848180)
chr7 (148-227)||(5108711-5108790)
chr7 (145-227)||(8877567-8877649)
chr7 (118-221)||(11803221-11803323)
chr7 (148-227)||(17153028-17153106)
chr7 (144-227)||(8053933-8054015)
chr7 (171-227)||(3329554-3329610)
chr7 (147-227)||(6042597-6042676)
chr7 (144-224)||(8978876-8978956)
chr7 (144-224)||(39273046-39273126)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-227)||(76550-76776)
[»] scaffold0093 (1 HSPs)
scaffold0093 (38-132)||(43308-43402)
[»] scaffold0016 (1 HSPs)
scaffold0016 (24-132)||(3752-3860)
[»] scaffold0008 (1 HSPs)
scaffold0008 (32-88)||(234614-234670)
[»] scaffold0638 (1 HSPs)
scaffold0638 (144-227)||(692-775)
[»] scaffold0024 (1 HSPs)
scaffold0024 (148-227)||(39732-39809)
[»] scaffold0056 (3 HSPs)
scaffold0056 (125-219)||(25129-25221)
scaffold0056 (29-87)||(35666-35724)
scaffold0056 (118-227)||(21411-21519)


Alignment Details
Target: scaffold0671 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 792 - 577
Alignment:
Q  11 agtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaac 110  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||    
T  792 agtggctaaaacccattgggtcaggtggtgccctacctatttaggaaactcccaacggccttatcacttcaatagtcaccaagagataaataaacgcgac 693  T
Q  111 atttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctc 210  Q
    ||||||||||||||||||| || ||||||||| |||||||||||| ||||||| ||| | ||||| ||| ||||||||||| ||||||||||| ||||||    
T  692 atttagattacatattatctaacaataaatatccagaggggattcgaagaatcctaaccgctgcttacttttctgcaacca-aaacaggtaaattcgctc 594  T
Q  211 tgttgcaaacagataaa 227  Q
    |||||||||||||||||    
T  593 tgttgcaaacagataaa 577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 16916673 - 16916899
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||||||| |||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  16916673 ttaggtacccagttgctaaaacccattgggtcaggtagtgccctacctatttaggaaactcccaacggccttatcacttctatagtcaccaacagataaa 16916772  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | ||||| ||||||| ||||| || ||||||| ||||||||| |||||||||||| ||||||| ||  | ||||| ||| ||||||||||| ||||||||    
T  16916773 taaacgcgacatttatattacgtactatccaacaataaatatacagaggggattcgaagaatcctacccgctgcttacttttctgcaaccaaaaacaggt 16916872  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| ||||||||||||||| |||||||    
T  16916873 aaattcgctctgttgcaaagagataaa 16916899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 24054338 - 24054113
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  24054338 ttaggtacccagtggctaaaacccattgggtcaggtggtgccctacctatttaggaaactcccaacggccttatcacttttatagtcaccaaaagataaa 24054239  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataa-tctctgctcactattctgcaaccataaacagg 199  Q
    | ||||| | ||||| ||||  |||||||||| || |||||| |||||| ||||| ||||||| ||| | || |||  || |||  |||||| ||||| |    
T  24054238 taaacgcgatatttatattatgtattatccaacaacaaatatacagaggagattcgaagaatcctaactgtc-gctttcttttcaacaacca-aaacaag 24054141  T
Q  200 taaaatcgctctgttgcaaacagataaa 227  Q
    |||| |||||||||||||||||||||||    
T  24054140 taaattcgctctgttgcaaacagataaa 24054113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 14781616 - 14781819
Alignment:
Q  24 catttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaacatttagattacat 123  Q
    |||| |||||||||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||||| ||| | ||||||| ||||  |    
T  14781616 cattgggtcaggtggtgccctacttatttaggaaactcccaacgaccttattacttctatagtcaccaagagataaataaacacgacatttaaattatgt 14781715  T
Q  124 attatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacaga 223  Q
    ||||||||| |||||||||  ||||||||||| ||||||| |||   ||| ||||| ||||||||||| ||||||||||| | |||||| |||||||| |    
T  14781716 attatccaacaataaatatatagaggggattcgaagaatcctaactgctgatcacttttctgcaaccaaaaacaggtaaatttgctctgatgcaaacata 14781815  T
Q  224 taaa 227  Q
    ||||    
T  14781816 taaa 14781819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 18830841 - 18830618
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataa 99  Q
    ||||||||||||||||||| || |||| ||||||||||||||  |||||  ||||||  |||||| ||||| ||||||| ||||||| | ||| ||||||    
T  18830841 ttaggtacccagtggctaagacccattgggtcaggtggtgcctgacctaagtaggaacatcccaacggcctcatcacttttatagtctatcaa-agataa 18830743  T
Q  100 attaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacagg 199  Q
    || ||||| ||||||  ||||| | |||||||| ||  ||||| |||| |||||||||| ||||||||    |||| ||| || |||||||| |||||||    
T  18830742 ataaacgcgacatttgtattacttgttatccaaaaacgaatatacagaagggattcaaaaaatcataaatgttgcttacttttatgcaacca-aaacagg 18830644  T
Q  200 taaaatcgctctgttgcaaacagata 225  Q
    ||||||  ||||||||||||||||||    
T  18830643 taaaatttctctgttgcaaacagata 18830618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 727827 - 727602
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||||||||| | | || |||| |||||| |||||||||||||||||||||||||||||| | ||| ||||||| |||||||  |  ||||||||    
T  727827 ttaggtacccagtggatgatacccattgggtcagatggtgccctacctatttaggaaactcccaacgacctcatcacttgtatagtctacctgagataaa 727728  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgc-tcactattctgcaaccataaacagg 199  Q
    | ||||| ||||||  ||||| |||||||||| |    |||| || ||||||||| ||||||| ||| | |||| | ||| ||||||||||| |||||||    
T  727727 taaacgcgacatttgtattacttattatccaacatcgtatatacaaaggggattcgaagaatcttaaccgctgctttact-ttctgcaacca-aaacagg 727630  T
Q  200 taaaatcgctctgttgcaaacagataaa 227  Q
    |||| |  || ||||||||||| |||||    
T  727629 taaattttctatgttgcaaacaaataaa 727602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23180155 - 23179931
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||| ||||| | |  |||||| ||||| ||||||||||||||||||||||||||| ||| || |  ||||||| |||||||  | | |||||||    
T  23180155 ttaggtacctagtggatgatgctcattgggtcaagtggtgccctacctatttaggaaactcacaacggtcgcatcacttgtatagtctacta-agataaa 23180057  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | ||| | ||||||| ||||  |||||||||| ||| ||||| |||||||||||| || |||| | | | ||||| ||| |||| |||||| ||| ||||    
T  23180056 taaacacgacatttatattatttattatccaacaatgaatatacagaggggattcgaataatccttaccgctgcttacttttctccaacca-aaaaaggt 23179958  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||||| | | | ||| |||||||||||    
T  23179957 aaaattgttattttgtaaacagataaa 23179931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 18736006 - 18736205
Alignment:
Q  30 gtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaacat--ttagattacatatta 127  Q
    ||||||||||||| ||||||  ||||||  |||||| ||||| ||||||| |||||||  |   |||||||| ||||| ||||  ||  ||||  ||| |    
T  18736006 gtcaggtggtgccttacctaagtaggaacatcccaacggcctcatcacttatatagtctacttaagataaataaacgcgacatacttttattatttatca 18736105  T
Q  128 tccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||| ||||||||| |||||||||||| ||||||| | | | ||||  ||| ||||||||||| ||| ||||||| | ||||| |||||||||||||||    
T  18736106 tccaacaataaatatacagaggggattcgaagaatccttaccgctgcctacttttctgcaaccaaaaataggtaaacttgctctattgcaaacagataaa 18736205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 18826015 - 18825790
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataa 99  Q
    |||||| || ||||||| |||| |||| ||||| |||||||| ||||||  ||||||   ||||| | ||| ||||||| ||||||| ||| | ||||||    
T  18826015 ttaggtgccaagtggctgaaacccattgggtcaagtggtgccttacctaagtaggaacgacccaacgacctcatcacttgtatagtctaccta-agataa 18825917  T
Q  100 attaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacagg 199  Q
    || ||||   |||||  ||||| |||||||||| ||  ||||| |||||||||||||||||||| | ||| ||||| ||| |||| |||||| ||||| |    
T  18825916 ataaacgtgtcatttgtattacttattatccaacaacgaatatacagaggggattcaaagaatccttatcgctgcttacttttctacaacca-aaacaag 18825818  T
Q  200 taaaatcgctctgttgcaaacagataaa 227  Q
    |||| | ||| ||||| |||||||||||    
T  18825817 taaatttgctttgttgtaaacagataaa 18825790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 25403850 - 25404036
Alignment:
Q  32 caggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataaattaacgcaacat--ttagattacatattat 128  Q
    ||||||||||| |||||| |||||||  ||||||   ||| ||||||| ||||||| ||| | |||||||| ||||||||||  ||   |||| ||||||    
T  25403850 caggtggtgccttacctaattaggaacatcccaacaacctcatcacttgtatagtctaccta-agataaataaacgcaacatactt---ttacttattat 25403945  T
Q  129 ccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaa 219  Q
    |||| ||||||||| |||||||| || |||||||| ||| | || || ||| ||||| ||||| ||||||||||| | |||||||||||||    
T  25403946 ccaacaataaatatacagagggggtttaaagaatcctaaccgctacttacttttctggaaccaaaaacaggtaaagttgctctgttgcaaa 25404036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 21987843 - 21987947
Alignment:
Q  123 tattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacag 222  Q
    |||||||||| |||| |||| ||||||| |||||||||||| | | | ||||| ||| || |||||||| ||||||||||| | |||||||||||||||     
T  21987843 tattatccaacaatatatatacagagggtattcaaagaatccttaccgctgcttacttttatgcaaccaaaaacaggtaaagttgctctgttgcaaacat 21987942  T
Q  223 ataaa 227  Q
    |||||    
T  21987943 ataaa 21987947  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 17610130 - 17610209
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||| ||||||||||| ||| | ||||| ||| ||||||||||| ||||||||||| | ||||||||||||||| |||||    
T  17610130 ggggtttcaaagaatcctaaccgctgcttacttttctgcaaccaaaaacaggtaaacttgctctgttgcaaacatataaa 17610209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 29242761 - 29242653
Alignment:
Q  117 attacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgc 216  Q
    ||||| |||||||||| |||| |||| || ||| ||||||||| ||| ||| | || || ||| || |||||||| ||||||||||| | ||||||||||    
T  29242761 attacttattatccaacaatatatataca-aggagattcaaagtatcctaaccgcttcttacttttttgcaacca-aaacaggtaaacttgctctgttgc 29242664  T
Q  217 aaacagataaa 227  Q
    |||||||||||    
T  29242663 aaacagataaa 29242653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 21449301 - 21449223
Alignment:
Q  149 gggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||| ||||||| ||| | ||||| ||| ||||||| ||| |||||| |||| | ||| |||||||||||||||||    
T  21449301 gggattcgaagaatcctaaccgctgcttacttttctgcatccaaaaacagttaaacttgctatgttgcaaacagataaa 21449223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 31235920 - 31236002
Alignment:
Q  145 agaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||| |||||||||||| ||| |  |||| ||| || |||||||| ||||| ||||| | ||||||||||||| |||||||    
T  31235920 agagggaattcaaagaatcttaaccgttgcttacttttatgcaaccaaaaacaagtaaacttgctctgttgcaaagagataaa 31236002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 12208826 - 12208751
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagat 224  Q
    |||||||| ||||||| ||| | ||||| ||| ||||||| | | ||||||||||| | ||||||||||||||||||    
T  12208826 ggggattcgaagaatcctaaccgctgcttacttttctgcagcta-aaacaggtaaacttgctctgttgcaaacagat 12208751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 16179208 - 16179152
Alignment:
Q  171 ctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||| ||| ||||||||||| ||| ||||||| | |||||||||||| ||||||||    
T  16179208 ctgcttacttttctgcaaccaaaaataggtaaacttgctctgttgcaatcagataaa 16179152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 22623140 - 22623045
Alignment:
Q  123 tattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaa 219  Q
    ||||||||||  || |||||  ||||||||||  ||||||| |||   ||||| ||| ||||||||||| ||||||||||| | |||||||||||||    
T  22623140 tattatccaacgatgaatatatagaggggatttgaagaatcctaacagctgcttacttttctgcaacca-aaacaggtaaacttgctctgttgcaaa 22623045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 32382882 - 32382960
Alignment:
Q  147 aggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||||||||| |||   ||||| ||  ||||||||||| ||||||||||  | |||||||||||||||||||||    
T  32382882 aggggattcaaagaatcctaacggctgctaacatttctgcaacca-aaacaggtaattt-gctctgttgcaaacagataaa 32382960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 20023280 - 20023505
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||| |||||||    
T  20023280 ttaggtacctagtggctaaaactcattgggtcaggtggtgccctacctatttaggaaactcccaacaaccttatcacttctatagtcatcaaaagataaa 20023379  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | ||| | ||||||||||||| |||||||||| |||||||||  ||||||||||||||||||| |||   || || ||| ||||||||||| |||| |||    
T  20023380 taaacacgacatttagattacgtattatccaacaataaatatatagaggggattcaaagaatcctaactgctacttacttttctgcaacca-aaactggt 20023478  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| |||||||||||||||||||||||    
T  20023479 aaattcgctctgttgcaaacagataaa 20023505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 19167745 - 19167543
Alignment:
Q  24 catttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaacatttagattacat 123  Q
    |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||  |    
T  19167745 cattgggtcaggtggtgccctacctatttaggacactcccaatggtcttatcacttctatagtcaccaagagataaataaacgcaacatttaaattatgt 19167646  T
Q  124 attatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacaga 223  Q
    |||||||||||||||||||  ||| |||||||||| |||| ||| |  |||| ||| ||||||||||| ||| ||||||| ||||| | |||||||||||    
T  19167645 attatccaataataaatatatagatgggattcaaataatcctaaccgttgcttact-ttctgcaaccaaaaataggtaaattcgctttattgcaaacaga 19167547  T
Q  224 taaa 227  Q
    ||||    
T  19167546 taaa 19167543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 8882852 - 8883076
Alignment:
Q  3 aggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaatt 102  Q
    ||||||| |||||||||||| |||| |||||||||||||||||| |||||||||||||||||| | | | ||||||| |||| ||  |   ||||||||     
T  8882852 aggtacctagtggctaaaacccattgggtcaggtggtgccctacttatttaggaaactcccaacgacatcatcacttgtataatctacttaagataaata 8882951  T
Q  103 aacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaa 202  Q
    ||||| ||||||  ||||| |||||||||| ||  ||||| |||||||||||| ||||||| |||   | ||| | | ||||||||| | ||| ||||||    
T  8882952 aacgcgacatttgtattacttattatccaacaacgaatatacagaggggattcgaagaatcctaactgcagcttaattttctgcaactaaaaataggtaa 8883051  T
Q  203 aatcgctctgttgcaaacagataaa 227  Q
    | ||||| |||||||||||||||||    
T  8883052 actcgctatgttgcaaacagataaa 8883076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 12754673 - 12754876
Alignment:
Q  24 catttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataaattaacgcaacatttagattaca 122  Q
    |||||||||||||||||||||||||||||||||| ||||||| || || ||||||| ||||||| ||| | |||||||| ||||| ||||||| ||||      
T  12754673 catttggtcaggtggtgccctacctatttaggaagctcccaacggactcatcacttgtatagtctaccta-agataaataaacgcgacatttatattatt 12754771  T
Q  123 tattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacag 222  Q
    |||||||||| ||   |||| |  ||||||||| ||||||| ||| | ||||| ||| ||||||||||| || |||||||| | |||||||||||||||     
T  12754772 tattatccaacaacgtatataccaaggggattcgaagaatcctaaccgctgcttacttttctgcaaccaaaaccaggtaaactagctctgttgcaaacaa 12754871  T
Q  223 ataaa 227  Q
    |||||    
T  12754872 ataaa 12754876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 19909788 - 19909902
Alignment:
Q  89 ccaagagataaattaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaa 188  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||| ||||||||| || ||||||||||||||||| ||| | ||||| ||| ||||||||    
T  19909788 ccaagagataaataaacgcgacatttaaattacatattatccaacaataaatatacataggggattcaaagaatcctaaccgctgcttacttttctgcaa 19909887  T
Q  189 ccataaacaggtaaa 203  Q
    | | |||||||||||    
T  19909888 caaaaaacaggtaaa 19909902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 27413655 - 27413850
Alignment:
Q  32 caggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataaattaacgcaacatttagattacatattatcc 130  Q
    |||||||| |||||||||||||||||||||||||  |||| || |||| ||||||| ||| | |||||||| | |||  |||||  ||||| ||| ||||    
T  27413655 caggtggtaccctacctatttaggaaactcccaacagcctcataacttatatagtctaccta-agataaataagcgcggcatttttattacttatcatcc 27413753  T
Q  131 aataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    || ||  ||||| |||| | ||| | ||||||| ||| | ||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  27413754 aacaacgaatatacagacgagatacgaagaatcctaaccgctgcttacttttctgcaaccaaaaacaggtaaaatcgctctgttgaaaacagataaa 27413850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 16229698 - 16229907
Alignment:
Q  3 aggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaatt 102  Q
    ||||||||||||||||||||||||| ||||| |||||||  |||||||||| ||||||||||  || ||||| |||| |||||||||||| ||||||||     
T  16229698 aggtacccagtggctaaaactcattgggtcaagtggtgcgttacctatttacgaaactcccagcggtcttatgacttttatagtcaccaaaagataaata 16229797  T
Q  103 aacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaa 202  Q
      ||| ||| ||||||||| |               |||| |||||  ||||| ||||||| ||| | ||||| ||| || |||||||| ||||||||||    
T  16229798 gccgcgacagttagattacgt---------------atatacagagctgattcgaagaatcctaaccgctgcttacttttttgcaaccaaaaacaggtaa 16229882  T
Q  203 aatcgctctgttgcaaacagataaa 227  Q
    | |||||||||||||||||||||||    
T  16229883 attcgctctgttgcaaacagataaa 16229907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8170239 - 8170017
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||||||||| | |  | |||| ||||| |||| |||||||||||||||||||||||||  |||||   ||||| ||| |||  | | | |||||    
T  8170239 ttaggtacccagtggatgatgcacattgggtcaagtggagccctacctatttaggaaactcccagcggcct---cacttgtatggtctactaaa-ataaa 8170144  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | ||| | ||||||| ||||  || ||||||| ||  ||||| |||||||||||| ||||||| ||| | ||||  ||| ||||||||||| ||||||||    
T  8170143 taaacacgacatttatattatttactatccaacaacgaatatacagaggggattcgaagaatcctaaccgctgcatacttttctgcaaccaaaaacaggt 8170044  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| ||||| |||||||||||||||||    
T  8170043 aaattcgctatgttgcaaacagataaa 8170017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 4650574 - 4650372
Alignment:
Q  24 catttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataaattaacgcaacatttagattaca 122  Q
    |||| ||||||||| |||| || | | |||||||  | |||||||||| ||||||  ||||||| ||| | |||||||||||||| |||| ||  ||||     
T  4650574 cattgggtcaggtgatgccttatccagttaggaacattccaatggcctcatcactcgtatagtctaccta-agataaattaacgcgacatatattttact 4650476  T
Q  123 tattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacag 222  Q
    ||| |||||| ||| ||||| || ||||||||| ||||||| ||| |  |||| ||| ||||||||||| ||||||||||| | |||| |||||||||||    
T  4650475 tataatccaacaatgaatatacataggggattcgaagaatcctaaccgttgcttacttttctgcaacca-aaacaggtaaacttgctccgttgcaaacag 4650377  T
Q  223 ataaa 227  Q
    |||||    
T  4650376 ataaa 4650372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 17438302 - 17438383
Alignment:
Q  145 agaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||| ||||||| ||| |  |||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  17438302 agaggggattcgaagaatcctaaccgttgcttacttttctgcaacca-aaacaggtaaaattgctctgttgcaaacagataaa 17438383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 8770286 - 8770154
Alignment:
Q  94 agataaattaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccata 193  Q
    |||||||| ||| | ||||||  ||||| ||||||| || || | |||| |||||||||||| ||||||| |||   ||||| ||| ||||||||||| |    
T  8770286 agataaataaacacgacatttttattacttattatctaacaacatatatacagaggggattcgaagaatcctaactgctgcttacttttctgcaacca-a 8770188  T
Q  194 aacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||||| | ||||||||||||||| |||||    
T  8770187 aacaggtaaacttgctctgttgcaaacatataaa 8770154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 8765384 - 8765252
Alignment:
Q  94 agataaattaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccata 193  Q
    |||||||| ||| | ||||||  ||||| ||||||| || || | |||| || ||||||||| ||||||| |||   ||||| ||| ||||||||||| |    
T  8765384 agataaataaacacgacatttttattacttattatctaacaacatatatacaaaggggattcgaagaatcttaactgctgcttacttttctgcaacca-a 8765286  T
Q  194 aacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||||| | ||||||||||||||| |||||    
T  8765285 aacaggtaaacttgctctgttgcaaacatataaa 8765252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 19575986 - 19576094
Alignment:
Q  24 catttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataaattaacgcaacatttagattaca 122  Q
    |||| ||||||||||||||||||| |||||||||| |||||| |  || ||||||| ||||||| ||| | |||||||| ||||  ||||||| |||||     
T  19575986 cattgggtcaggtggtgccctaccaatttaggaaagtcccaacgtactcatcacttgtatagtctaccta-agataaataaacgtgacatttatattact 19576084  T
Q  123 tattatccaa 132  Q
    ||||||||||    
T  19576085 tattatccaa 19576094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 932998 - 932889
Alignment:
Q  117 attacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgc 216  Q
    ||||| |||||||||| || | |||| ||||||| |||| ||||||  ||| | ||||| ||| ||||||||||| ||||| ||||| | ||||||||||    
T  932998 attacttattatccaacaacatatatacagagggaattcgaagaatactaaccgctgcttacttttctgcaacca-aaacaagtaaacttgctctgttgc 932900  T
Q  217 aaacagataaa 227  Q
    ||||| |||||    
T  932899 aaacaaataaa 932889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 227
Target Start/End: Original strand, 19925378 - 19925575
Alignment:
Q  29 ggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataaattaacgcaacatttagattacatatta 127  Q
    |||||||||||||| |||||| |||||||  |||||| ||||| || |||| |||| || ||| | | |||||| || || |||| ||  |||| |||||    
T  19925378 ggtcaggtggtgccttacctaattaggaacatcccaacggcctcattacttttataatctacctaaa-ataaataaatgcgacatatat-ttacttatta 19925475  T
Q  128 tccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    | ||| ||| ||||| ||||| || ||  ||||||| ||| | ||||| ||| |||||||| |  ||||||||||| | ||||||||||||||| |||||    
T  19925476 ttcaacaatgaatatacagagtgggttagaagaatcctaaccgctgcttacttttctgcaaaccaaaacaggtaaacttgctctgttgcaaacatataaa 19925575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 16523530 - 16523756
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||  | |||||||||||||| |||||||||||||||||    
T  16523530 ttaggtacccagtggctaaaacccattgggtcaggtggtgccctacctatttagaaaactcccaccgaccttatcacttctacagtcaccaagagataaa 16523629  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | ||||| ||| ||| ||||| |||||||||| | |||||||  ||||||||||||||||||| ||| | ||||| ||| ||||  ||| | ||||||||    
T  16523630 taaacgcgacacttatattacgtattatccaacattaaatatatagaggggattcaaagaatcctaaccgctgcttacttttctataacaaaaaacaggt 16523729  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| |||||||||||||||||||||||    
T  16523730 aaattcgctctgttgcaaacagataaa 16523756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 28665133 - 28664908
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    |||||| || |||||||||||| |||| |||||| |||||||||||||||||||||||||||||   |||||||||||| |||||||||||| |||||||    
T  28665133 ttaggttcctagtggctaaaacccattgggtcagatggtgccctacctatttaggaaactcccagctgccttatcacttttatagtcaccaaaagataaa 28665034  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | |||||||||||||||||||||||||||||| ||  ||||| |||||||||||| ||||||| ||| |  |||| | | ||||||||||| ||||||||    
T  28665033 taaacgcaacatttagattacatattatccaacaacgaatatacagaggggattcgaagaatcttaaccgttgcttatttttctgcaacca-aaacaggt 28664935  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| |||||||||||||||||||||||    
T  28664934 aaattcgctctgttgcaaacagataaa 28664908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 17314839 - 17315065
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttct-atagtcaccaagagataa 99  Q
    |||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||| | ||||||||||| ||||||    
T  17314839 ttagttacccagtggctaaaacccatttggtcaggtagtgctctacctatttaggaaacgcccaacggccttatcacttttgatagtcaccaaaagataa 17314938  T
Q  100 attaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacagg 199  Q
    || |||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||||| ||| | ||||| ||| || |||||||| |||||||    
T  17314939 ataaacgcaacatttagattacatattatccaacaacgaatatacagaggggattcaaagaatcttaaccgctgcttacttttttgcaacca-aaacagg 17315037  T
Q  200 taaaatcgctctgttgcaaacagataaa 227  Q
    |||  ||||||| ||||||| |||||||    
T  17315038 taacttcgctctattgcaaaaagataaa 17315065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 16523305 - 16523467
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    |||||||||||||||||||||| |||| |||  |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  16523305 ttaggtacccagtggctaaaacccattgggtggggtggtgccctacctatttaggaaactcccaacgaccttatcacttctatagtcaccaagagataaa 16523404  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatc 163  Q
    | ||||| ||||||| ||||| |||||||||| |||||||||  ||||||||||| |||||||    
T  16523405 taaacgcgacatttatattacgtattatccaacaataaatatatagaggggattcgaagaatc 16523467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 20859044 - 20858819
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||  |||||||    
T  20859044 ttaggtacccagtggctaaaacccattgggtcaggtggtgccctacctatttaggaaactcccaatggctgtatcacttttatagtcaccagaagataaa 20858945  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | ||||| ||||||| ||||| |||||||||| ||  ||||| || | ||||||| | ||||| ||| | ||||| ||| || |||||||| ||| ||||    
T  20858944 taaacgcgacatttatattacgtattatccaacaacgaatatacacatgggattcgacgaatcctaaccgctgcttacttttatgcaacca-aaataggt 20858846  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| ||||| |||||||||| ||||||    
T  20858845 aaattcgctttgttgcaaaccgataaa 20858819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 19008311 - 19008462
Alignment:
Q  29 ggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaacatttagattacatattat 128  Q
    |||||||||||||||||||||||||| |||||||||| || ||||||||||||||| |||||||||||||||| ||| | ||||||||||||  ||||||    
T  19008311 ggtcaggtggtgccctacctatttagaaaactcccaacgggcttatcacttctatattcaccaagagataaataaacacgacatttagattatgtattat 19008410  T
Q  129 ccaataataaatatgcagaggggattcaaagaatcataatctctgctcacta 180  Q
    |||| ||||||||| || ||||||||| ||||||| ||| | ||||| ||||    
T  19008411 ccaacaataaatatacataggggattcgaagaatcctaaccgctgcttacta 19008462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 26835985 - 26835796
Alignment:
Q  38 gtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaacatttagattacatattatccaataata 137  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||  ||||||||||||| || ||||||| |||     
T  26835985 gtgccctacctatttaggaaactcccaacggccttatcacttctatagtcaccaaaagataaataaacgtgacatttagattacgtactatccaacaatg 26835886  T
Q  138 aatat--gcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||   || | ||||||| ||||||| |||   ||||  ||| |||||||||   ||||||||||| |||||||||||||||||||||||    
T  26835885 aatatacacatatgggattcgaagaatcctaactgctgcatacttttctgcaac--aaaacaggtaaattcgctctgttgcaaacagataaa 26835796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 20563881 - 20563958
Alignment:
Q  24 catttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaat 101  Q
    |||| ||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  20563881 cattgggttaggtggtgccctacctatttaagaaactcccaacgaccttatcacttctatagtcaccaagagataaat 20563958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 23388608 - 23388716
Alignment:
Q  24 catttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataaattaacgcaacatttagattaca 122  Q
    |||| |||||||||||||||||||||||||| | |||||||| ||||| ||||||| ||||||| ||| | |||||||| ||||| ||||||| ||||      
T  23388608 cattgggtcaggtggtgccctacctatttagcagactcccaacggcctcatcacttgtatagtctaccta-agataaataaacgcgacatttatattatt 23388706  T
Q  123 tattatccaa 132  Q
    ||||||||||    
T  23388707 tattatccaa 23388716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 20549446 - 20549671
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataa 99  Q
    ||||||||||||||| | |  | |||| |||||| ||||||||||||||||||||||||||   | |||||  |||||| ||||||| ||| | |||| |    
T  20549446 ttaggtacccagtggatgatgcccattgggtcagatggtgccctacctatttaggaaactcttgacggcctcgtcacttgtatagtctaccta-agatga 20549544  T
Q  100 attaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacagg 199  Q
    || ||||  |  |||| ||||  |||||||||| ||  ||||| |||||||| ||| ||||||| ||| | ||||| |||   ||||||||| |||||||    
T  20549545 ataaacgtgat-tttatattatttattatccaacaaagaatatacagaggggtttcgaagaatcctaaccgctgcttacttgcctgcaaccaaaaacagg 20549643  T
Q  200 taaaatcgctctgttgcaaacagataaa 227  Q
    ||||||| |||||||| |||||| ||||    
T  20549644 taaaatcactctgttgtaaacaggtaaa 20549671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 20315180 - 20315382
Alignment:
Q  24 catttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataaattaacgcaacatttagattaca 122  Q
    |||| |||||||||||||| || | ||||| |||  |||||| |  || ||||||| ||||||| ||| | |||||||| ||||| |||| |   ||||     
T  20315180 cattgggtcaggtggtgccttatccatttatgaacatcccaacgatctcatcacttgtatagtctaccca-agataaataaacgcgacatatcttttact 20315278  T
Q  123 tattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacag 222  Q
    |||||||||| ||| ||||| |||| ||||||| ||||| | ||||| || || |||||| |||||||| ||||| ||||| | ||| ||||||||||||    
T  20315279 tattatccaacaatgaatatacagacgggattcgaagaaccctaatcgcttcttactattttgcaacca-aaacatgtaaacttgctttgttgcaaacag 20315377  T
Q  223 ataaa 227  Q
    |||||    
T  20315378 ataaa 20315382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 24140806 - 24140582
Alignment:
Q  2 taggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataaa 100  Q
    |||||||||||||| || ||| |||| |||||||| ||||| |||||  |||||||  |||||||||||  ||||||  ||||||| ||| | |||||||    
T  24140806 taggtacccagtggatagaacccattgggtcaggttgtgccttacctcattaggaacatcccaatggccgcatcactcgtatagtctaccta-agataaa 24140708  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | || ||  ||| ||  |||| |||||||||| ||| ||||| || || |||||  ||||||| ||| |  |||| ||| ||||||||||| ||| ||||    
T  24140707 taaaggcgccatatattttacttattatccaacaatgaatatacaaagtggatttgaagaatcctaaccgttgcttacttttctgcaacca-aaataggt 24140609  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| | ||||||| ||| |||||||||    
T  24140608 aaacttgctctgtcgcacacagataaa 24140582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 20563953 - 20564045
Alignment:
Q  135 ataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||  |||||| ||||| ||||||| |||   || || ||| ||||||||||| ||||| ||||| | |||||||||||||||||||||    
T  20563953 ataaataaacagaggtgattcgaagaatcctaactgcttcttacttttctgcaaccaaaaacaagtaaatttgctctgttgcaaacagataaa 20564045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 20744545 - 20744622
Alignment:
Q  149 gggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||| ||||||| ||| | ||||| ||| |||| |||||| ||||||||||| | ||| |||||||||||||||||    
T  20744545 gggattcgaagaatcctaaccgctgcttacttttctacaacca-aaacaggtaaacttgctatgttgcaaacagataaa 20744622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 34128892 - 34128788
Alignment:
Q  117 attacatattatccaataataaatatgcagagggg-attcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttg 215  Q
    ||||| |||||||||| |||| |||| || ||||| |||| ||||||| ||| |  |||| ||| ||||||||||| ||||||||||| | ||||| |||    
T  34128892 attacttattatccaacaatacatattcatagggggattcgaagaatcctaaccgttgcttacttttctgcaacca-aaacaggtaaacttgctctattg 34128794  T
Q  216 caaaca 221  Q
    ||||||    
T  34128793 caaaca 34128788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 17432108 - 17432033
Alignment:
Q  147 aggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacaga 223  Q
    |||| |||| ||||||| ||| | ||||| ||| ||||||||||| ||||| ||||| | |||||||||||||||||    
T  17432108 agggtattcgaagaatcctaaccgctgcttacttttctgcaacca-aaacaagtaaacttgctctgttgcaaacaga 17432033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 16404262 - 16404047
Alignment:
Q  11 agtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaac 110  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||    
T  16404262 agtggctaaaacccattgggtcaggtggtgccctacctatttaggaaactcccaacggccttatcacttcaatagtcaccaagagataaataaacgcgac 16404163  T
Q  111 atttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctc 210  Q
    ||||||||||| ||||||| || ||||||||| | |||||||||| ||||||| ||| | ||||| | | ||||||| ||| ||| ||||||| ||||||    
T  16404162 atttagattacgtattatctaacaataaatatcccgaggggattcgaagaatcctaaccgctgcttatttttctgcagcca-aaataggtaaattcgctc 16404064  T
Q  211 tgttgcaaacagataaa 227  Q
    ||||||||||| |||||    
T  16404063 tgttgcaaacaaataaa 16404047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23892941 - 23893166
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||  |||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| || ||||    
T  23892941 ttaggtacttagtgactaaaacccattgggtcaagtggtgccctacctatttaggaaactcccaacggccttatcatttttatagtcaccaaaaggtaaa 23893040  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | ||||  | ||||||||||| |||||||||| || |||||| |||| ||||||||||||||| |||   ||  | ||| ||||||||||| ||||||||    
T  23893041 taaacgagatatttagattacgtattatccaacaacaaatatacagatgggattcaaagaatcctaactactagttacttttctgcaacca-aaacaggt 23893139  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| | ||| |||||||||||||||||    
T  23893140 aaatttgctttgttgcaaacagataaa 23893166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 19264402 - 19264249
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||||||||||   ||| ||||||| |||||||  | | |||||||    
T  19264402 ttaggtacccagtcgctaaaaccgattgggtcaggtggtgccctacctatttaggaaactcccaaccacctcatcacttgtatagtctacta-agataaa 19264304  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattc 155  Q
    | ||| | ||||||  ||||| |||||||||| ||||||||| ||||||||||||    
T  19264303 taaacacgacatttgtattacttattatccaacaataaatatacagaggggattc 19264249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 18569313 - 18569201
Alignment:
Q  114 tagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgt 213  Q
    |||||||| |||||||||| ||||||||| |||| | |||||||| |||| ||| | ||||| ||| ||||||||||| ||||| ||||| ||||| |||    
T  18569313 tagattacgtattatccaacaataaatatacagacgagattcaaaaaatcgtaaccgctgcttacttttctgcaacca-aaacaagtaaactcgctatgt 18569215  T
Q  214 tgcaaacagataaa 227  Q
    ||||||||||||||    
T  18569214 tgcaaacagataaa 18569201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 24269821 - 24269743
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||| ||||||| ||| | ||||| ||| ||||||||||| ||||||||||| |  ||||||||||||||||||||    
T  24269821 ggggattcgaagaatcctaaccgctgcttacttttctgcaaccaaaaacaggtaaact-actctgttgcaaacagataaa 24269743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 13698078 - 13698002
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||||| |||||||| ||||| ||| ||||||||||  |||||||| || | ||||||||||||| |||||||    
T  13698078 ggggattcaaagagtcataatcactgcttacttttctgcaacc--aaacaggt-aacttgctctgttgcaaagagataaa 13698002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 18448417 - 18448494
Alignment:
Q  149 gggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||| ||||||||||||| |  |||| ||| || |||||||| |||||||| || | |||||||||||||||||||||    
T  18448417 gggatacaaagaatcataaccgttgcttacttttatgcaaccaaaaacaggt-aacttgctctgttgcaaacagataaa 18448494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 24723356 - 24723426
Alignment:
Q  17 taaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc 87  Q
    |||||| |||| ||||||||||||| |||||||  ||||||  |||||| ||||| ||||||| |||||||    
T  24723356 taaaacacattgggtcaggtggtgctctacctaaataggaacatcccaacggcctcatcacttgtatagtc 24723426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 13314865 - 13314945
Alignment:
Q  147 aggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||| ||||||| ||| |  |||| ||| ||||||||||| ||||||||||| | | || |||||||||| |||||    
T  13314865 aggggattcgaagaatcttaaccgttgcttacttttctgcaaccaaaaacaggtaaatttgttcagttgcaaacatataaa 13314945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 17101802 - 17101858
Alignment:
Q  171 ctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||| ||| || ||||| || ||||||||||| | |||||||||||||||||||||    
T  17101802 ctgcttacttttttgcaatcaaaaacaggtaaacttgctctgttgcaaacagataaa 17101858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 17198226 - 17198002
Alignment:
Q  3 aggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaatt 102  Q
    ||||||| |||||||||||| |||| ||||||||  ||||||||||||||||||||||| ||| | ||| ||| |||||||||||||||||||||||||     
T  17198226 aggtaccaagtggctaaaacccattaggtcaggtcatgccctacctatttaggaaactctcaacgacctgatcgcttctatagtcaccaagagataaata 17198127  T
Q  103 aacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaa 202  Q
    ||||| ||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||| ||| | ||||| ||| ||||||||||| ||| |||| |    
T  17198126 aacgcgacatttagattacgtattatccaacaataaatatacagaggggattcgaagaatcttaaccgctgcttacttttctgcaaccaaaaataggtga 17198027  T
Q  203 aatcgctctgttgcaaacagataaa 227  Q
    | |||||||| ||||||| ||||||    
T  17198026 attcgctctgctgcaaactgataaa 17198002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 25920542 - 25920399
Alignment:
Q  84 agtcaccaagagataaattaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattc 183  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||||||| |||    
T  25920542 agtcaccaagagataaattaacgcgacatttagattacatattatccaacaataaatatacaaaggggattcaaagaatcataatcactgctcacttttc 25920443  T
Q  184 tgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  25920442 tgcaaccaaaaacaggtaaaatcgctctgttgcaaacagataaa 25920399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25530808 - 25530582
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||| ||    
T  25530808 ttaggtacctagtggataaaacccattgggtcaggtggtgccctacctatttaggaaactcccaacgaccttatcacttttatagtcaccaaaagattaa 25530709  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcaga-ggggattcaaagaatcataatctctgctcactattctgcaaccataaacagg 199  Q
    | ||||| |||||| |||||  |||||||||| ||  ||||| |||| |||||||| ||||||| ||| | ||||| |||||| |||||||| |||||||    
T  25530708 taaacgcgacatttggattatgtattatccaacaactaatatacagagggggattcgaagaatcctaaccgctgcttactattttgcaacca-aaacagg 25530610  T
Q  200 taaaatcgctctgttgcaaacagataaa 227  Q
    |||| |||||||||||||||||||||||    
T  25530609 taaattcgctctgttgcaaacagataaa 25530582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 24090666 - 24090872
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||||||| |||||||  |||| |||||||||||||||||||||||||| |||||||||| | ||| ||||||| |||||||||||  |||||||    
T  24090666 ttaggtacccagtagctaaaaaccattgggtcaggtggtgccctacctatttagaaaactcccaacgacctcatcacttttatagtcaccataagataaa 24090765  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | ||||  ||||||||||||| |||||||| | ||  ||||| |||||||||||| ||| ||| ||| | ||||| ||| ||||||||||| ||||||||    
T  24090766 taaacgtgacatttagattacttattatccgacaacgaatatacagaggggattcgaagcatcctaaccactgcttacttttctgcaacca-aaacaggt 24090864  T
Q  201 aaaatcgc 208  Q
    ||| ||||    
T  24090865 aaattcgc 24090872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 25535625 - 25535408
Alignment:
Q  10 cagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaa 109  Q
    ||||||||||||| |||| ||||| ||| |||||||||||||||||||||||  || | ||||||||| | |||||||||||| |||| ||| ||||| |    
T  25535625 cagtggctaaaacccattaggtcatgtgttgccctacctatttaggaaactctgaacgaccttatcacatttatagtcaccaaaagattaataaacgcga 25535526  T
Q  110 catttagattacatattatccaataataaatatgcaga-ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgc 208  Q
    ||||| |||||| |||||||||| ||  |||||  ||| |||||||| |||||||  || | ||||| ||| || |||||||| ||||||||||| || |    
T  25535525 catttggattacgtattatccaacaactaatatatagagggggattcgaagaatcccaaccgctgcttacttttttgcaacca-aaacaggtaaattcac 25535427  T
Q  209 tctgttgcaaacagataaa 227  Q
     |||||||||| |||||||    
T  25535426 gctgttgcaaatagataaa 25535408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 26667643 - 26667452
Alignment:
Q  24 catttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataaattaacgcaacatttagattaca 122  Q
    |||| ||| |||||||||||||||||||||  ||||||||||  |||| ||||||| |||| || | | | |||||||| ||||| ||||||| ||||      
T  26667643 cattgggttaggtggtgccctacctatttaataaactcccaagagcctcatcacttgtataatctatcta-agataaataaacgcgacatttatattatt 26667545  T
Q  123 tattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttg 215  Q
    |||||||||| ||  ||||| |||||||||||| ||||||| ||| | ||| | ||| ||||||||||  ||||||||||||||||| |||||    
T  26667544 tattatccaacaacgaatatacagaggggattcgaagaatcctaaccgctgtttacttttctgcaaccgaaaacaggtaaaatcgctatgttg 26667452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 28925747 - 28925668
Alignment:
Q  147 aggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||| ||||||| ||| ||||||| ||| ||||||||||| ||||||||||| | ||| ||||||||||| |||||    
T  28925747 aggggattcgaagaatcctaacctctgcttacttttctgcaacca-aaacaggtaaacttgctatgttgcaaacaaataaa 28925668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 26603234 - 26603312
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||| ||||||| ||| | ||||| ||| |||| |||||| ||||||||||| | |||||||||||||||||||||    
T  26603234 ggggattcgaagaatcctaaccgctgcttacttttctacaaccaaaaacaggtaaact-gctctgttgcaaacagataaa 26603312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 27908993 - 27909071
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||| ||||||| ||| | ||||| | | ||||||||||| ||||||||||| | |||||||||||||||||||||    
T  27908993 ggggattcgaagaatcctaaccgctgcttaattttctgcaacca-aaacaggtaaacttgctctgttgcaaacagataaa 27909071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 29143226 - 29143096
Alignment:
Q  96 ataaattaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaa 195  Q
    |||||| ||| | ||||||| ||||| |||||||||| |    |||| |||||||||||| ||||||| ||| | ||| | ||| |||| |||||| |||    
T  29143226 ataaataaactcgacatttatattacttattatccaacagcgtatatacagaggggattcgaagaatcttaaccgctgtttacttttctacaacca-aaa 29143128  T
Q  196 caggtaaaatcgctctgttgcaaacagataaa 227  Q
     ||||||| | |||||||||||||||||||||    
T  29143127 taggtaaacttgctctgttgcaaacagataaa 29143096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 30411892 - 30411813
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||| || |||| ||| | ||||| ||| ||||||||||| ||||| ||||| | |||||||||||||||||||||    
T  30411892 ggggattcgaaaaatcctaaccgctgcttacttttctgcaaccaaaaacatgtaaacttgctctgttgcaaacagataaa 30411813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 25887778 - 25887856
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||  ||||||||||||| ||| | ||| ||||||||||| ||| |||| || | |||||||||||||||||||||    
T  25887778 ggggatttgaagaatcataatcgctggttacttttctgcaaccaaaaataggt-aacttgctctgttgcaaacagataaa 25887856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 17349576 - 17349494
Alignment:
Q  145 agaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||| ||||||  | | | ||||| ||| || |||||||| ||||| ||||| | |||||||||||||||||||||    
T  17349576 agaggggattcgaagaattctgaccgctgcttacttttttgcaaccaaaaacaagtaaacttgctctgttgcaaacagataaa 17349494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 17675536 - 17675581
Alignment:
Q  181 ttctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||||    
T  17675536 ttctgcaacca-aaacaggtaaacttgctctgttgcaaacagataaa 17675581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 29719103 - 29719185
Alignment:
Q  145 agaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||| ||||||| |||   ||||| ||| ||||||||||| | ||||||||| | ||||||||||| ||| |||||    
T  29719103 agaggggattcgaagaatcctaactgctgcttacttttctgcaaccaaacacaggtaaacttgctctgttgcatacatataaa 29719185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 17635683 - 17635727
Alignment:
Q  182 tctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||||| ||||||||||| | |||||||||||||||||||||    
T  17635683 tctgcaacca-aaacaggtaaacttgctctgttgcaaacagataaa 17635727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 25196265 - 25196157
Alignment:
Q  118 ttacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgca 217  Q
    |||| |||||| ||| ||| ||||| ||||||| | || ||||||| ||| | ||||| ||| || |||||||| ||||||||||| | ||| |||||||    
T  25196265 ttacttattattcaacaatgaatatacagagggaaatcgaagaatcctaaccactgcttacttttttgcaacca-aaacaggtaaacttgctatgttgca 25196167  T
Q  218 aacagataaa 227  Q
    |||| |||||    
T  25196166 aacatataaa 25196157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 25618757 - 25618702
Alignment:
Q  171 ctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||| ||| ||||||||||| ||||||||||| |  ||||||||||||||||||||    
T  25618757 ctgcttacttttctgcaacca-aaacaggtaaactttctctgttgcaaacagataaa 25618702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23009135 - 23009360
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||  ||||||||||| |||||||    
T  23009135 ttaggtacccagtggctaaaacccatttagtcaggtggtgctctacctatttaggaaactcccaacggccttatcactttcatagtcaccaaaagataaa 23009234  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | ||||| ||||||||||||| |||||| ||| |||||||||  ||||||||||| |||| || ||||| ||| | |||  ||| |||||| ||||||||    
T  23009235 taaacgcgacatttagattacgtattattcaacaataaatatatagaggggattcgaagagtcctaatcgctgtttactcgtcttcaacca-aaacaggt 23009333  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| | ||||||||||||||| |||||    
T  23009334 aaatttgctctgttgcaaacaaataaa 23009360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23779229 - 23779004
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||  ||||||||||| |||||||    
T  23779229 ttaggtacccagtggctaaaacccatttagtcaggtggtgctctacctatttaggaaactcccaacggccttatcactttcatagtcaccaaaagataaa 23779130  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | ||||| ||||||||||||| |||||| ||| |||||||||  ||||||||||| |||| || ||||| ||| | |||  ||| |||||| ||||||||    
T  23779129 taaacgcgacatttagattacgtattattcaacaataaatatatagaggggattcgaagagtcctaatcgctgtttactcgtcttcaacca-aaacaggt 23779031  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| | ||||||||||||||| |||||    
T  23779030 aaatttgctctgttgcaaacaaataaa 23779004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 20005645 - 20005871
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataa 99  Q
    ||||||||||||||| | |  | |||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||| | ||||||    
T  20005645 ttaggtacccagtggatgatgcccattgggtcaggtggtgccctacctatttaggaaactcccaacggcctcatcacttatatagtctaccta-agataa 20005743  T
Q  100 attaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacagg 199  Q
    || ||| | ||||||| ||||  |||||||||| || | |||| |||||||||||| ||||||| ||| | ||||  ||  ||||||||||| |||||||    
T  20005744 ataaactcgacatttatattatttattatccaacaacatatatacagaggggattcgaagaatcttaaccgctgcatacctttctgcaaccaaaaacagg 20005843  T
Q  200 taaaatcgctctgttgcaaacagataaa 227  Q
    |||| ||||||||||||||||| |||||    
T  20005844 taaactcgctctgttgcaaacaaataaa 20005871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22412789 - 22413014
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||| |||||||||||||| |||| |||||||||||| |||||||||||||||||||||| | ||||||||||||| |||||||||||| |||||||    
T  22412789 ttaggtaaccagtggctaaaacccattaggtcaggtggtgtcctacctatttaggaaactccctacggccttatcacttttatagtcaccaaaagataaa 22412888  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | || || | ||||||||| |  ||||||||| |||| | || || |||  |||| ||||||| ||| | || || ||| | ||| ||||| ||||||||    
T  22412889 taaatgcgatatttagattgcgcattatccaacaatataaatacaaaggcaattcgaagaatcctaaccgctacttactttcctgtaacca-aaacaggt 22412987  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| |||||||||| ||||||||||||    
T  22412988 aaattcgctctgttacaaacagataaa 22413014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 24657234 - 24657421
Alignment:
Q  42 cctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaacatttagattacat---attatccaa-taata 137  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||||| ||||||| ||| |||||||| ||||||| |   |||||||||  ||      
T  24657234 cctacctatttaggaaactcccaacagccttatcacttttatagtcaccaaaagataaa-taaagcaacattcagattacttataattatccaacaaacg 24657332  T
Q  138 aatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||  ||||||||||| ||||||  ||| | ||||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  24657333 aatatatagaggggattcgaagaattctaaccgctgcttacttttctgcaacca-aaacaggtaaattcgctctgttgcaaacagataaa 24657421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 11136174 - 11136042
Alignment:
Q  96 ataaattaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattct-gcaaccataa 194  Q
    |||||| ||||| | ||||| ||||| ||||||| || || |||||| |||||||||||| ||||||| ||| | || || ||| || | ||||||| ||    
T  11136174 ataaataaacgcgaaatttatattacttattatcaaacaacaaatatacagaggggattcgaagaatcctaaccgcttcttactttttttgcaaccaaaa 11136075  T
Q  195 acaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||  |||||||||||||||||||||||    
T  11136074 acaggtaagttcgctctgttgcaaacagataaa 11136042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 27124368 - 27124447
Alignment:
Q  147 aggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||||||||| ||| | ||||| ||| ||||||||||| | ||||||||| | ||||||||||||||| |||||    
T  27124368 aggggattcaaagaatcttaaccgctgcttacttttctgcaacca-agacaggtaaacttgctctgttgcaaacatataaa 27124447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 21841520 - 21841589
Alignment:
Q  94 agataaattaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatc 163  Q
    |||||||| ||||| ||||||| ||||| |||||||||| || | |||| |||||||||||| |||||||    
T  21841520 agataaataaacgcgacatttatattacttattatccaacaacatatatacagaggggattcgaagaatc 21841589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 25782011 - 25781924
Alignment:
Q  139 atatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||| |||||||||||| ||||||| |||   ||| | ||| ||||||||||| ||| ||||||| | |||||||||||||||||||||    
T  25782011 atatacagaggggattcgaagaatcctaactactgtttacttttctgcaacca-aaataggtaaacttgctctgttgcaaacagataaa 25781924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 14637093 - 14637026
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttg 215  Q
    |||||||| ||||||| || || ||||| ||| ||||||||||| ||||||||||| | |||||||||    
T  14637093 ggggattcgaagaatcctattcgctgcttacttttctgcaaccaaaaacaggtaaacttgctctgttg 14637026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 27737565 - 27737641
Alignment:
Q  150 ggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||| ||||||| ||| | ||||| ||| || |||||| | ||||||||||| | |||||||||||||||||||||    
T  27737565 ggattcgaagaatcctaaccgctgcttacttttttgcaacaa-aaacaggtaaacttgctctgttgcaaacagataaa 27737641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 17382270 - 17382215
Alignment:
Q  171 ctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||| ||| ||||||||||| ||||| ||||| | |||||||||||||||||||||    
T  17382270 ctgcttacttttctgcaacca-aaacatgtaaacttgctctgttgcaaacagataaa 17382215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 12406459 - 12406650
Alignment:
Q  30 gtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaacatttagattacatattatc 129  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||||    
T  12406459 gtcaggtggtgccctacctatttaggaaactcccaacgaccttatcacttctatagtcaccaatagataaataaacgcgacatttagattacgtattatc 12406558  T
Q  130 caataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaaca 221  Q
    ||| ||||||||| | |||||||||| ||||||| ||| | ||| | ||| | ||||||||| ||||||||||| ||||||| |||||||||    
T  12406559 caacaataaatatacggaggggattcgaagaatcctaaccgctgtttactttcctgcaaccaaaaacaggtaaattcgctctattgcaaaca 12406650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 11253481 - 11253646
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||||| |||||| ||| |||| |||||| ||||||||||| |||||||||||||||||| | |||||||| || |||||||||||| |||||||    
T  11253481 ttaggtacccaatggctagaacccattgggtcagatggtgccctacgtatttaggaaactcccaacgaccttatcaattttatagtcaccaaaagataaa 11253580  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcata 166  Q
    | ||||| ||||||||||||  |||||||||| ||  ||||| |||||||||||||||||||||||    
T  11253581 taaacgcgacatttagattatgtattatccaacaactaatatacagaggggattcaaagaatcata 11253646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25098193 - 25097967
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||| |||||||||||||| |||  |||||||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||| |||||||    
T  25098193 ttaggtatccagtggctaaaacccatcgggtcaggtggtgccctacctatttaggaaacttccaacggcctcatcacttttatagtcaccaaaagataaa 25098094  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | |   | ||||||||||||  |||||||||| ||  ||||| ||||| |||||| ||||||| ||| | ||||  ||| |||  |||||| ||||||||    
T  25098093 taagaacgacatttagattatgtattatccaacaactaatatacagagcggattcgaagaatcctaaccgctgcatacttttcaacaaccaaaaacaggt 25097994  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| | ||| |||||| ||||||||||    
T  25097993 aaatttgctttgttgccaacagataaa 25097967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 17026071 - 17026297
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataa 99  Q
    ||||||||||||||| | |  | |||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||| | |||||     
T  17026071 ttaggtacccagtggatgatgcccattgggtcaggtggtgccctacctatttaggaaactcccaacggcctcatcacttgtatagtctaccta-agatag 17026169  T
Q  100 attaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacagg 199  Q
    || || || ||||||| ||||  |||||||||| ||  ||||| || ||||||||| ||||||| ||| | ||||| |||  |||||||||| |||||||    
T  17026170 ataaatgcgacatttatattatttattatccaacaacgaatatacaaaggggattcgaagaatcctaaccgctgcttacttgtctgcaaccaaaaacagg 17026269  T
Q  200 taaaatcgctctgttgcaaacagataaa 227  Q
    |||| |  ||||||||||||||||||||    
T  17026270 taaatttactctgttgcaaacagataaa 17026297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25094926 - 25094700
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    |||||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||||||| || ||||| ||||| | |||||||||||| | |||||    
T  25094926 ttaggtactcagtggctaaaacccatttggtcaaatggtgccctacctatttaggaaactccaaacggcctcatcacatttatagtcaccaaaatataaa 25094827  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | |     |||||||||| |  |||||||||| ||  ||||| |||||||||||| ||||||| ||| | |||||   | |||| || ||| ||  ||||    
T  25094826 taagaaagacatttagatgatgtattatccaaaaactaatatacagaggggattctaagaatcctaaccgctgcttgattttctacatccaaaactaggt 25094727  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| ||||| |||||||||||||||||    
T  25094726 aaattcgctttgttgcaaacagataaa 25094700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 17337009 - 17337088
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||| ||||||||||||||||||| ||| || |||||||| ||||||||||| | ||||||||| |||||||||||    
T  17337009 ggggattcgaagaatcataatctctgcttacttttatgcaaccaaaaacaggtaaacttgctctgttgtaaacagataaa 17337088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 13909079 - 13909000
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||||||||||| ||| | ||||| ||| || |||||||| ||||||||||| | |||||||||||||||||||||    
T  13909079 ggggattcaaagaatcctaaccgctgcttacttttttgcaaccaaaaacaggtaaacttgctctgttgcaaacagataaa 13909000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 24639336 - 24639414
Alignment:
Q  149 gggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||||||| ||| | ||||| ||| ||||||||||  ||||||||||| | ||||||||||||||| |||||    
T  24639336 gggattcaaagaatcctaaccactgcttacttttctgcaaccgaaaacaggtaaacttgctctgttgcaaacaaataaa 24639414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 7582526 - 7582446
Alignment:
Q  144 cagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagat 224  Q
    |||||||||||||||||||| ||| | ||||| | | ||||||||||| ||||||||||| | | ||| ||||||||||||    
T  7582526 cagaggggattcaaagaatcctaaccactgcttatttttctgcaaccaaaaacaggtaaacttgttctattgcaaacagat 7582446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 19562045 - 19562128
Alignment:
Q  144 cagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||||||| ||||||  ||| | ||| | ||| ||||||||||| ||||||||||| | ||||||||||||| |||||||    
T  19562045 cagaggggattcgaagaattctaaccgctgattacttttctgcaaccaaaaacaggtaaacttgctctgttgcaaagagataaa 19562128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 4615083 - 4615023
Alignment:
Q  24 catttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatag 85  Q
    |||| |||||||||||||| || ||||||||||||||||||| ||||| ||||||| |||||    
T  4615083 cattgggtcaggtggtgccataactatttaggaaactcccaa-ggcctcatcacttgtatag 4615023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5832 - 6058
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||||||||| | |  | |||| |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| ||||||||||||    
T  5832 ttaggtacccagtggatgatgcccattgggtcaggtggtgccctacctatttaggaaactgcaaacggccttatcacttctatagtctccaagagataaa 5931  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | ||||| ||||||||||||| |||||||||| ||||||||| || ||||||||| ||||||| | | |  | || ||| |||| |||||| ||||| ||    
T  5932 taaacgcgacatttagattacgtattatccaacaataaatatacataggggattcgaagaatcctgaccgttacttacttttctacaaccaaaaacaagt 6031  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| ||||||| |||||||||||||||    
T  6032 aaattcgctctattgcaaacagataaa 6058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 227
Target Start/End: Original strand, 6470 - 6668
Alignment:
Q  29 ggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaacatttagattacatattat 128  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||||  |||||||||||| ||||| ||||||||||||| ||||||    
T  6470 ggtcaggtggtgccctacctatttaggaaactgacaacggccttatcaattctatagtcttcaagagataaataaacgcgacatttagattacgtattat 6569  T
Q  129 ccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||| ||||||||| || ||||||||| ||||||| | | | ||||| ||| || || ||||| ||||| ||||| || |||| |||||||||||||||    
T  6570 ccaacaataaatatacataggggattcgaagaatcctgaccgctgcttacttttttgaaaccaaaaacaagtaaattcactctattgcaaacagataaa 6668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13289152 - 13289368
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  13289152 ttaggtatccagtagctaaaacccatttggtcaggtggtgccctacctatttaggaaactcccaacgaccttatcacttctatagtcaccaagagataaa 13289251  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
          | ||||||||||||  |||||||||| ||||||||| |||| ||||||| ||||||  ||| | ||  | | | ||||||||||| ||||||||    
T  13289252 ------cgacatttagattaggtattatccaacaataaatatacagatgggattcgaagaattctaaccgcttattaattttctgcaaccaaaaacaggt 13289345  T
Q  201 aaaatcgctctgttgcaaacaga 223  Q
    ||| |||| || |||||||||||    
T  13289346 aaattcgcactattgcaaacaga 13289368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4449339 - 4449114
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||||| |||||||||  |||| |||||||||||||||||||||||||  |||||||||| ||||| |||| || |||| | |||   |||||||    
T  4449339 ttaggtacccaatggctaaaatccattgggtcaggtggtgccctacctatttaaaaaactcccaacggcctcatcagttttatattaaccttaagataaa 4449240  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | || |  ||||||||||||| |||||||||| ||  ||||| |||||||||||||||||||  ||| | ||| | ||| || |||||||| ||| ||||    
T  4449239 taaatgtgacatttagattacttattatccaacaaagaatatacagaggggattcaaagaattctaaccgctgtttacttttttgcaacca-aaataggt 4449141  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| |||||||| ||||||||||||||    
T  4449140 aaattcgctctgctgcaaacagataaa 4449114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 17190942 - 17191167
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||||||||| | |  | |||| |||||||||||||||||||||||||| ||||||||||   ||| ||||||| ||||||   | | |||||||    
T  17190942 ttaggtacccagtggatgatgcccattgggtcaggtggtgccctacctatttagaaaactcccaacaacctcatcacttatatagtttacta-agataaa 17191040  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | ||||  ||||||| ||||   |||||| || || |||||| ||||||| |||  ||||||| ||||| || ||  || ||||||||||| ||||||||    
T  17191041 taaacgtgacatttatattattaattatctaacaacaaatatacagagggcatttgaagaatcctaatcactactttcttttctgcaaccaaaaacaggt 17191140  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||||||| |||||||||||    
T  17191141 aaaatcgctctgttggaaacagataaa 17191167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 13277835 - 13277638
Alignment:
Q  29 ggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataaattaacgcaacatttagattacatatta 127  Q
    ||||||||||||||||||||||||||||||||||||| |  || | ||||| ||||||| ||| | |||||||| || |  ||||||| ||||  |||||    
T  13277835 ggtcaggtggtgccctacctatttaggaaactcccaacgatctcaccacttgtatagtctaccta-agataaataaatgtgacatttaaattaattatta 13277737  T
Q  128 tccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||| ||   |||| |||||||||||||||||||| ||||| || || ||| |||| |||||| |||||||| || ||||||| | |||||||||||||    
T  13277736 tccaacaacgtatatacagaggggattcaaagaatcctaatcgctacttacttttctacaacca-aaacaggtcaattcgctctatagcaaacagataaa 13277638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 22066985 - 22067127
Alignment:
Q  12 gtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaaca 111  Q
    ||||||||||| |||| ||||| ||  || | |||||||||||||||||||||| || |||| ||||| || ||||||||| |||| ||| ||||| |||    
T  22066985 gtggctaaaacccattgggtcaagtaatgtcttacctatttaggaaactcccaacggtcttaccacttttacagtcaccaaaagatgaataaacgctaca 22067084  T
Q  112 tttagattacatattatccaataataaatatgcagaggggatt 154  Q
    |||| ||||  |||||||||| ||| ||||| ||||| |||||    
T  22067085 tttaaattatgtattatccaacaatgaatatacagagaggatt 22067127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 16058853 - 16058986
Alignment:
Q  94 agataaattaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccata 193  Q
    |||||||| ||||| | ||||| ||||  |||||||||| || |||||| |||||||||||| ||||||| |||   ||||| ||| | ||||||||| |    
T  16058853 agataaataaacgcgagatttatattatttattatccaacaaaaaatatacagaggggattcgaagaatcctaacagctgcttactttactgcaaccaaa 16058952  T
Q  194 aacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||| ||||| | |||||||||||||||||||||    
T  16058953 aacaagtaaatttgctctgttgcaaacagataaa 16058986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 16058763 - 16058826
Alignment:
Q  24 catttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc 87  Q
    |||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||    
T  16058763 cattgggtcaggtggtgccctacctatttaggaaactcccaacgacctcatcacttgtatagtc 16058826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 227
Target Start/End: Complemental strand, 13418831 - 13418668
Alignment:
Q  63 caatggccttatcacttctatagtc-accaagagataaattaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaa 161  Q
    ||||||||| ||||||| ||||||| ||| | |||||||| ||||   |||||  ||||| |||||||||| |||  ||||  |||| ||||||||||||    
T  13418831 caatggcctcatcacttgtatagtctaccta-agataaataaacgtgccatttctattacttattatccaacaatctatatatagagtggattcaaagaa 13418733  T
Q  162 tcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    || ||| | ||||| ||| | |||||| || ||||||||||| | |||||||||||||||||||||    
T  13418732 tcctaaccgctgcttactttgctgcaatca-aaacaggtaaacttgctctgttgcaaacagataaa 13418668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 20582534 - 20582402
Alignment:
Q  94 agataaattaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccata 193  Q
    |||||||| ||||| ||||||| ||||| |||||| ||| || | |||| || | ||||||| ||||||| |||   ||||| ||| ||||||||||| |    
T  20582534 agataaataaacgcgacatttatattacttattattcaacaacatatatacaaatgggattcgaagaatcctaactgctgcttacttttctgcaacca-a 20582436  T
Q  194 aacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||||| | ||||||||||||| |||||||    
T  20582435 aacaggtaaacttgctctgttgcaaatagataaa 20582402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 1848105 - 1848180
Alignment:
Q  151 gattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||| ||||||||||| | ||||| ||| ||||||||||| ||||||||||| | |||||||| ||||||||||||    
T  1848105 gattcgaagaatcataaccgctgcttacttttctgcaacca-aaacaggtaaacttgctctgtttcaaacagataaa 1848180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 5108790 - 5108711
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||||||||||| ||| | ||||| ||| ||||||||||| || || ||||| | ||||| |||||||||||||||    
T  5108790 ggggattcaaagaatcctaaccgctgcttacttttctgcaaccaaaatcaagtaaacttgctctcttgcaaacagataaa 5108711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 8877649 - 8877567
Alignment:
Q  145 agaggggattcaaagaatcataatctctgctcactattct-gcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||||||||||| ||| | ||||| |||||| | ||||||| ||| ||||||| | |||||||||||||||||||||    
T  8877649 agaggggattcaaagaatcctaaccgctgcttactatttttgcaacca-aaataggtaaacttgctctgttgcaaacagataaa 8877567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 11803323 - 11803221
Alignment:
Q  118 ttacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgca 217  Q
    |||| |||||||||| |||| |||| |||||||||||| || |||| ||| | ||| | |||  |||||||||| ||||||||||| | |||||||||||    
T  11803323 ttacttattatccaacaatatatatacagaggggattcgaataatcctaaccgctggttacttctctgcaacca-aaacaggtaaacttgctctgttgca 11803225  T
Q  218 aaca 221  Q
    ||||    
T  11803224 aaca 11803221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 17153028 - 17153106
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||||| |||||| | ||||| ||| ||||||||||| |||||||| || | ||| |||||||||||||||||    
T  17153028 ggggattcaaagagtcataaccgctgcttacttttctgcaaccaaaaacaggt-aacttgctttgttgcaaacagataaa 17153106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 8053933 - 8054015
Alignment:
Q  144 cagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||||||||||||||| |||   ||||| ||| ||||||||||| ||||||||||| | ||| | ||||||| |||||||    
T  8053933 cagaggggattcaaagaatcctaactgctgcttacttttctgcaacca-aaacaggtaaacttgctatattgcaaatagataaa 8054015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 3329554 - 3329610
Alignment:
Q  171 ctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||| ||| ||||||||||| ||||| ||||| | ||| |||||||||||||||||    
T  3329554 ctgcttacttttctgcaaccaaaaacaagtaaacttgctatgttgcaaacagataaa 3329610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 6042676 - 6042597
Alignment:
Q  147 aggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||||||||| ||| | ||||| | | ||||||||||| ||| ||||||| |  |||||||||||||| |||||    
T  6042676 aggggattcaaagaatcctaaccgctgcttatttttctgcaaccaaaaaaaggtaaact-tctctgttgcaaacatataaa 6042597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 8978876 - 8978956
Alignment:
Q  144 cagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagat 224  Q
    ||||||||||| |||||||| |||   ||||| | | ||||||||||| ||||||||||| | | ||| ||||||||||||    
T  8978876 cagaggggatttaaagaatcctaactgctgcttatttttctgcaaccaaaaacaggtaaacttgttctattgcaaacagat 8978956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 39273046 - 39273126
Alignment:
Q  144 cagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagat 224  Q
    |||||| ||||| ||| ||| ||| | ||||| ||| ||||||||||| ||| ||||||| | ||||||||||||| ||||    
T  39273046 cagaggagattcgaaggatcctaaccgctgcttacttttctgcaaccaaaaataggtaaacttgctctgttgcaaatagat 39273126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 76776 - 76550
Alignment:
Q  1 ttaggtacccagtggctaaaactcatttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaa 100  Q
    ||||||||| |||||||||||| |||| |||| ||||||||  |||||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||    
T  76776 ttaggtacctagtggctaaaacccattgggtccggtggtgctttacctatttaggaaactcccaacggcctcatcacttttatagtcaccaaaagataaa 76677  T
Q  101 ttaacgcaacatttagattacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggt 200  Q
    | |   | ||||||||||||  |||||||||| ||| | ||| |||||||||||| ||||||| |||||  |||| ||| |||| |||||| ||||||||    
T  76676 taagaacgacatttagattatgtattatccaacaattagtatacagaggggattcgaagaatcctaatcggtgcttacttttctacaaccaaaaacaggt 76577  T
Q  201 aaaatcgctctgttgcaaacagataaa 227  Q
    ||| | ||| ||||| ||||| |||||    
T  76576 aaatttgctatgttgtaaacatataaa 76550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 43402 - 43308
Alignment:
Q  38 gtgccctacctatttaggaaactcccaatggccttatcacttctatagtcaccaagagataaattaacgcaacatttagattacatattatccaa 132  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||  ||||||||||||| || |||||||    
T  43402 gtgccctacctatttaggaaacttccaacggccttatcacttctatagtcaccaaaagataaataaacgtgacatttagattacgtactatccaa 43308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 3860 - 3752
Alignment:
Q  24 catttggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc-accaagagataaattaacgcaacatttagattaca 122  Q
    |||| |||||||||||||||||||||||||| | |||||||| ||||| ||||||| ||||||| ||| | |||||||| ||||| ||||||| ||||      
T  3860 cattgggtcaggtggtgccctacctatttagcagactcccaacggcctcatcacttgtatagtctaccta-agataaataaacgcgacatttatattatt 3762  T
Q  123 tattatccaa 132  Q
    ||||||||||    
T  3761 tattatccaa 3752  T

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Target: scaffold0008 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 234670 - 234614
Alignment:
Q  32 caggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtca 88  Q
    ||||||||||||| |||||||||||||||| ||| ||||| ||||||| ||||||||    
T  234670 caggtggtgccctgcctatttaggaaactcgcaacggcctcatcacttgtatagtca 234614  T

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Target: scaffold0638 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 692 - 775
Alignment:
Q  144 cagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    |||||||| ||| ||||||| ||| | || || ||| ||||||||||| ||||||||||| |  ||||||||||||||||||||    
T  692 cagagggggttcgaagaatcttaaccgcttcttacttttctgcaaccaaaaacaggtaaactttctctgttgcaaacagataaa 775  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 39809 - 39732
Alignment:
Q  148 ggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaacagataaa 227  Q
    ||||||||||||| |||||| | ||||| ||| ||||||||||| |||||||| || | |||||||||||||||||||||    
T  39809 ggggattcaaagagtcataaccgctgcttacttttctgcaacca-aaacaggt-aacttgctctgttgcaaacagataaa 39732  T

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Target: scaffold0056 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 25221 - 25129
Alignment:
Q  125 ttatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgcaaa 219  Q
    |||||||| ||| ||||| |||||||||||  ||||||| ||| |  |||| ||| ||||||||||| ||||||||||| | |||||||||||||    
T  25221 ttatccaa-aatgaatatacagaggggatttgaagaatcctaaccgttgcttacttttctgcaacca-aaacaggtaaacttgctctgttgcaaa 25129  T

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Target: scaffold0056; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 35724 - 35666
Alignment:
Q  29 ggtcaggtggtgccctacctatttaggaaactcccaatggccttatcacttctatagtc 87  Q
    |||||||||||||| |||||| |||||||  ||||||| |||| ||||||| |||||||    
T  35724 ggtcaggtggtgccttacctaattaggaacgtcccaattgcctcatcacttttatagtc 35666  T

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Target: scaffold0056; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 21519 - 21411
Alignment:
Q  118 ttacatattatccaataataaatatgcagaggggattcaaagaatcataatctctgctcactattctgcaaccataaacaggtaaaatcgctctgttgca 217  Q
    |||| |||||||||| ||| || ||  ||| ||||||| ||||||| ||||| || || ||| ||||| ||||| ||||||||||| |  ||||||||||    
T  21519 ttacttattatccaacaatgaacataaagaagggattcgaagaatcctaatcgctacttacttttctgaaacca-aaacaggtaaacttcctctgttgca 21421  T
Q  218 aacagataaa 227  Q
    |||| |||||    
T  21420 aacaaataaa 21411  T

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