View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7357_low_17 (Length: 222)
Name: NF7357_low_17
Description: NF7357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7357_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 28178857 - 28179044
Alignment:
| Q |
16 |
ttctccctgaagattccaacaatgccctcaaggtaggtagtggcatcataatcaaataacaaaaatgaacttattatatatgtatgtatagtgaaaagga |
115 |
Q |
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| T |
28178857 |
ttctccctgaagattccaacaatgccctcaaggtaggtagtggcatcataatcaaataacaaaaatgaacttatg---tatgtatgtatagtgaaaagga |
28178953 |
T |
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| Q |
116 |
gaatcaatctgtaccaaaaagattaatggttcaattatgatattgattgtctaataactcactttctttggtttattttgtctcttgttat |
206 |
Q |
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| T |
28178954 |
gaatcaatctgtaccaaaaggattaatggttcaattctgatattgattgtctaataactcactttctttggtttattttgtctcttgttat |
28179044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 28160364 - 28160424
Alignment:
| Q |
124 |
ctgtaccaaaaagattaatggttcaattatgatattgattgtctaataactcactttcttt |
184 |
Q |
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| T |
28160364 |
ctgtaccaaaaagcttaatggttcaattaggatattgattgtctaataactcacttccttt |
28160424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 28171094 - 28171127
Alignment:
| Q |
16 |
ttctccctgaagattccaacaatgccctcaaggt |
49 |
Q |
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| T |
28171094 |
ttctccctgaagattccaacaatgccctcaaggt |
28171127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 28169010 - 28169078
Alignment:
| Q |
55 |
gtggcatcataatcaaataacaaaaatgaacttattata-tatgtatgtatagtgaaaaggagaatcaa |
122 |
Q |
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| T |
28169010 |
gtggcattataatcaaataacaaaaacgatcctatgcttgtatgtatgtatagtgaaaaggagaatcaa |
28169078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 28177153 - 28177196
Alignment:
| Q |
140 |
aatggttcaattatgatattgattgtctaataactcactttctt |
183 |
Q |
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| T |
28177153 |
aatggttcaattaggatattggttgtctaataacacactttctt |
28177196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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