View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7357_low_2 (Length: 497)
Name: NF7357_low_2
Description: NF7357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7357_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Complemental strand, 27881896 - 27881437
Alignment:
| Q |
17 |
gacatcaaaaccgaatccgaaccaaacccattaacacaagcaaacccatgaacctgttgtcaaccattatagaaaatcagagagaataacaaaagatgca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27881896 |
gacatcaaaaccgaatccgaaccaaacccattaacacaagcaaacccatgaacctgttgtcaaccgttatagaaaatcagagagaataacaaaagatgca |
27881797 |
T |
|
| Q |
117 |
cagagaatacataataaaacataaaaagactaaactaccattaacttagttaagccgaataacaattatccaacacctctcctcacacccaccatgcatt |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27881796 |
cagagaatacataataaaacataaaaagactatactaccattaacttagttaagccgaataacaattatccaacatctctcctcacacccaccatgcatt |
27881697 |
T |
|
| Q |
217 |
aacagaaacatcaagagtttctcaaacaagaaacaaaaatgtactcaataataaacaatataaatgaatgaagacccaattcagtcactctcaattttct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27881696 |
aacagaaacatcaagagtttctcaaacaagaaacaaaaatgtactcaataataaacaatataaatgaatgaagacccaattcagtcactctcaattttct |
27881597 |
T |
|
| Q |
317 |
cgtggcccatttcagtctctggcaaataataaacccaaattagtcctacattttcatattagggacttggtcctcgatatgaaaatgtccgagactaatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27881596 |
cgtggcccatttcagtctctggcaaataataaacccaaattagtcctacattttcatattagggacttggtcctcgatatgaaaatgtccgagactaatt |
27881497 |
T |
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| Q |
417 |
tgggtttattttttgtgaggcactataaagggtcgtgaaaaaattgagagggaccgaatt |
476 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27881496 |
tgggtttattttttgtgaggcactataaagggtcgtgaaaaaattgagaaggaccgaatt |
27881437 |
T |
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