View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7357_low_6 (Length: 267)
Name: NF7357_low_6
Description: NF7357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7357_low_6 |
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| [»] chr3 (8 HSPs) |
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| [»] scaffold1643 (1 HSPs) |
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| [»] scaffold0958 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 7586952 - 7587200
Alignment:
| Q |
19 |
actcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttgtaa |
118 |
Q |
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|||||| ||||||||||||||||| |||||||||| ||||||||| |||| |||| |||||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
7586952 |
actcagcgtttgaagatggtttagcctccctatcttctttggcatcttctttatattacagccttcaagatgaagatggcgtaaactcacaaatttgtaa |
7587051 |
T |
|
| Q |
119 |
aattttgaagggagtttagtcaattcagaacagccttccagcatcagagtctctaatttgtacagcttacaaattgagtcaggcaacctttcaattaatg |
218 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7587052 |
aattttgaagggagtttagtcaattcaaaacagtcttccagtattagtgtctctaatttgtacagcttacaaattgagtcaggcaacctttcaattaatg |
7587151 |
T |
|
| Q |
219 |
attcagttaggtttagatatcgcaaaagctttagatttcctatctcacc |
267 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7587152 |
attcagtcaggtttagatatcgcaaaagctttagatttcctatctcacc |
7587200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 6795569 - 6795319
Alignment:
| Q |
16 |
atgactcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttg |
115 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |||||||||||| |||||||| ||||||||| |
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| T |
6795569 |
atgactcagtgtttgaagatggtttagactccccatctgctttggcattttctttatatgacagcctttaagattaagatggcgtaaactaacaagtttg |
6795470 |
T |
|
| Q |
116 |
taaaattttgaagggagtttagtcaattcagaacagccttccagcatcagagtctctaatttgtacagcttacaaattgagtcaggcaacctttcaatta |
215 |
Q |
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||||| |||||||||||| ||||||| | | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| | ||| |
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| T |
6795469 |
taaaactttgaagggagtgtagtcaaataataacagccttccagtatcagtgtctctaatttgtacagcttacaaattgagtcaggaaacctttgagtta |
6795370 |
T |
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| Q |
216 |
atgattcagttaggtttagatatcgcaaaagctttagatttcctatctcac |
266 |
Q |
| |
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||| | ||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
6795369 |
atgttccagccaggtttagatagcgcaaaagctttagatttcctatctcac |
6795319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 8470644 - 8470895
Alignment:
| Q |
16 |
atgactcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttg |
115 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||| ||||||| ||||||||| |
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| T |
8470644 |
atgactcagcgtttgaagatggattagactccctatctgctttggcatttcctttatattacagccttcaagattgagatggcgtaaacaaacaagtttg |
8470743 |
T |
|
| Q |
116 |
taaaattttgaagggagtttagtcaattcagaacagccttccagcatcagagtctctaatttgtacagcttacaaattgagtcaggcaacctttcaatta |
215 |
Q |
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||||| |||||||||||||||||||||| |||||||||||| || || | ||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
8470744 |
taaaaatttgaagggagtttagtcaatttagaacagccttctagtattaatgtctctaatttattcagcttacaaattgagtcaggcaacctttcaatta |
8470843 |
T |
|
| Q |
216 |
atgattcagttaggtttagatatcgcaaaagctttagatttcctatctcacc |
267 |
Q |
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||| | ||| | ||||||||| ||||||||||||||||||||||||||||| |
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| T |
8470844 |
atgttccagccaagtttagatagcgcaaaagctttagatttcctatctcacc |
8470895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 6839856 - 6839722
Alignment:
| Q |
16 |
atgactcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttg |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |||| ||||||||||||||||||||| |||||||| || |||||| |
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| T |
6839856 |
atgactcagtgtttgaagatggtttagcctccctatcttctttggcatcttctttatattacagccttcaagattaagatggcgtaaactgactagtttg |
6839757 |
T |
|
| Q |
116 |
taaaattttgaagggagtttagtcaattcagaaca |
150 |
Q |
| |
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||||| ||||||||||||| |||||||||| |||| |
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| T |
6839756 |
taaaaatttgaagggagttcagtcaattcataaca |
6839722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 8569872 - 8569713
Alignment:
| Q |
50 |
atctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttgtaaaattttgaagggagtttagtcaattcagaac |
149 |
Q |
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|||||||||||||| |||| ||| || ||||| ||||||||||| |||||| | ||||||||||||| | ||||||||| || ||||||||||||| |
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| T |
8569872 |
atctgctttggcatcttcttaatatcagtgccttttagattaagatggcgtaaattggcaagtttgtaaaaatatgaagggagcttggtcaattcagaac |
8569773 |
T |
|
| Q |
150 |
agccttccagcatcagagtctctaatttgtacagcttacaaattgagtcaggcaaccttt |
209 |
Q |
| |
|
| |||||| || || || | ||| || |||| ||||||||| || ||||||||||||| |
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| T |
8569772 |
attcttccaatattagtgtttgtaaattatacaacttacaaatggaatcaggcaaccttt |
8569713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 5279816 - 5279872
Alignment:
| Q |
86 |
agattaagatgacgtaaactcacaagtttgtaaaattttgaagggagtttagtcaat |
142 |
Q |
| |
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|||||||||||||||||| | |||||||||||||| ||||||||||| | ||||||| |
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| T |
5279816 |
agattaagatgacgtaaattgacaagtttgtaaaaatttgaagggagctcagtcaat |
5279872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 8453813 - 8453885
Alignment:
| Q |
89 |
ttaagatgacgtaaactcacaagtttgtaaaattttgaagggagtttagtcaattcagaacagccttccagca |
161 |
Q |
| |
|
||||||||||||||| | || |||||| |||| ||||||||||| | ||||||||| ||||||||||||||| |
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| T |
8453813 |
ttaagatgacgtaaattgacgagtttggaaaaatttgaagggagctctgtcaattcacaacagccttccagca |
8453885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 4389870 - 4389767
Alignment:
| Q |
29 |
tgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttgtaaaattttgaag |
128 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| |||| ||||| | |||||| |||| |||||||||||| | |||||||||||| | ||||| |
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| T |
4389870 |
tgaagatggtttagcctccctatctcttttggcatcttctttataagagtgccttccagatcaagatgacgtaagtttgtaagtttgtaaaaatctgaag |
4389771 |
T |
|
| Q |
129 |
ggag |
132 |
Q |
| |
|
|||| |
|
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| T |
4389770 |
ggag |
4389767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 1248 - 1496
Alignment:
| Q |
19 |
actcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttgtaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
1248 |
actcagtgtttgaagatggtttagactccctatctgctttggcattttctttatattacagcctttaagattaagatggcgtaaactcacaagtttgtaa |
1347 |
T |
|
| Q |
119 |
aattttgaagggagtttagtcaattcagaacagccttccagcatcagagtctctaatttgtacagcttacaaattgagtcaggcaacctttcaattaatg |
218 |
Q |
| |
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||||||||||||||| ||||||| | | |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1348 |
aattttgaagggagtatagtcaacttataacaatgttccaatatcagtgtctctaatttgtacagcttacaaattgagtcaggcaacctttcaattaatg |
1447 |
T |
|
| Q |
219 |
attcagttaggtttagatatcgcaaaagctttagatttcctatctcacc |
267 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1448 |
attgagtcaggtttagatatcgcaaaagctttagatttccaatctcacc |
1496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 811 - 681
Alignment:
| Q |
21 |
tcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttgtaaaa |
120 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||| |||||||| |||| ||| || ||||| |||||||||||||||||||| |||||||||||| |
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| T |
811 |
tcagtgtttgaagatcgtttagattcctgatctgttttggcatcttcttaatatcattgccttttagattaagatgacgtaaactggaaagtttgtaaaa |
712 |
T |
|
| Q |
121 |
ttttgaagggagtttagtcaattcagaacag |
151 |
Q |
| |
|
| |||||||||||| ||||||||||||||| |
|
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| T |
711 |
atatgaagggagtttggtcaattcagaacag |
681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 6574266 - 6574128
Alignment:
| Q |
21 |
tcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttgtaaaa |
120 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||||| |||| ||| || || | | |||||||||||||||||| | ||||||||||| |
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|
| T |
6574266 |
tcagtgtctgaagatggtttagcttccctatcttctttggcatcttcttaatatcagtgctattcatattaagatgacgtaaactgtcgagtttgtaaaa |
6574167 |
T |
|
| Q |
121 |
ttttgaagggagtttagtcaattcagaacagccttccag |
159 |
Q |
| |
|
| ||||||||||| |||||||||| |||||||||||| |
|
|
| T |
6574166 |
atctgaagggagttcggtcaattcagtacagccttccag |
6574128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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