View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7357_low_8 (Length: 245)

Name: NF7357_low_8
Description: NF7357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7357_low_8
NF7357_low_8
[»] chr2 (3 HSPs)
chr2 (42-219)||(2915351-2915527)
chr2 (53-98)||(41426199-41426244)
chr2 (43-92)||(2916275-2916324)
[»] chr8 (1 HSPs)
chr8 (52-94)||(13101719-13101761)
[»] chr5 (3 HSPs)
chr5 (50-101)||(8805202-8805253)
chr5 (51-91)||(8618684-8618724)
chr5 (43-103)||(39412143-39412203)
[»] chr4 (2 HSPs)
chr4 (43-94)||(29618621-29618672)
chr4 (43-92)||(19842210-19842259)
[»] chr1 (1 HSPs)
chr1 (43-93)||(43741637-43741687)
[»] scaffold0025 (1 HSPs)
scaffold0025 (43-103)||(3616-3676)
[»] chr3 (2 HSPs)
chr3 (43-91)||(30427398-30427446)
chr3 (63-100)||(2891972-2892009)
[»] chr7 (1 HSPs)
chr7 (52-94)||(46972576-46972618)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 2915527 - 2915351
Alignment:
Q  42 tgaccaaagtcaaaattggatgaaagtgcatagactaaacacacatttaagccaaaatttaacgaatccaaatatcaaattcaaatcaattaaattgttt 141  Q
    |||||||| | |||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  2915527 tgaccaaaattaaaattgggtgaaagtgcagggactaaacacacatttaagtcaaaatttaacgaatccaaatatcaaatttaaatcaattaaattggtt 2915428  T
Q  142 tggttttttcctatctccggatccagaccctgactaattaaatcaaaccccaacttttattagatattactggtagtc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2915427 tggttttttcctatctccggatccagaccctgactaattaaatcaaa-cccaacttttattagatattactggtagtc 2915351  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 41426244 - 41426199
Alignment:
Q  53 aaaattggatgaaagtgcatagactaaacacacatttaagccaaaa 98  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||    
T  41426244 aaaattggacgaaagtgcaaggactaaacacacatttaagccaaaa 41426199  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 2916275 - 2916324
Alignment:
Q  43 gaccaaagtcaaaattggatgaaagtgcatagactaaacacacatttaag 92  Q
    |||||||  ||||||||| ||||||||||  |||||||||||||||||||    
T  2916275 gaccaaaaccaaaattgggtgaaagtgcagggactaaacacacatttaag 2916324  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 13101761 - 13101719
Alignment:
Q  52 caaaattggatgaaagtgcatagactaaacacacatttaagcc 94  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  13101761 caaaattggatgaaagtgcatggactaaacacacatttaagcc 13101719  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 8805253 - 8805202
Alignment:
Q  50 gtcaaaattggatgaaagtgcatagactaaacacacatttaagccaaaattt 101  Q
    ||||||||||||| |||||||||| || ||||||||||||||||||| ||||    
T  8805253 gtcaaaattggataaaagtgcataaaccaaacacacatttaagccaacattt 8805202  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 8618724 - 8618684
Alignment:
Q  51 tcaaaattggatgaaagtgcatagactaaacacacatttaa 91  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  8618724 tcaaaattggatgaaagtgcagggactaaacacacatttaa 8618684  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 39412203 - 39412143
Alignment:
Q  43 gaccaaagtcaaaattggatgaaagtgcatagactaaacacacatttaagccaaaatttaa 103  Q
    |||||| ||||||||  ||||||||||||  ||||||| ||| |||||| |||||||||||    
T  39412203 gaccaatgtcaaaatctgatgaaagtgcaaggactaaatacatatttaaaccaaaatttaa 39412143  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 29618672 - 29618621
Alignment:
Q  43 gaccaaagtcaaaattggatgaaagtgcatagactaaacacacatttaagcc 94  Q
    ||||||||| |||||||| ||||||||||  |||||||||||||||||||||    
T  29618672 gaccaaagttaaaattgggtgaaagtgcaaggactaaacacacatttaagcc 29618621  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 19842259 - 19842210
Alignment:
Q  43 gaccaaagtcaaaattggatgaaagtgcatagactaaacacacatttaag 92  Q
    |||||| | ||||||||| ||||||||||| ||| |||||||||||||||    
T  19842259 gaccaatgccaaaattgggtgaaagtgcatggaccaaacacacatttaag 19842210  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 43741637 - 43741687
Alignment:
Q  43 gaccaaagtcaaaattggatgaaagtgcatagactaaacacacatttaagc 93  Q
    |||||||||||||||||  ||||||||||  ||||||||||||||||||||    
T  43741637 gaccaaagtcaaaattgagtgaaagtgcagggactaaacacacatttaagc 43741687  T

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Target: scaffold0025 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 3676 - 3616
Alignment:
Q  43 gaccaaagtcaaaattggatgaaagtgcatagactaaacacacatttaagccaaaatttaa 103  Q
    |||||| | ||||| |||| |||||||||  ||||||||||||||||||||| ||||||||    
T  3676 gaccaatgccaaaactggacgaaagtgcagggactaaacacacatttaagcctaaatttaa 3616  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 30427446 - 30427398
Alignment:
Q  43 gaccaaagtcaaaattggatgaaagtgcatagactaaacacacatttaa 91  Q
    |||||||| ||||||||||||||||||||  ||||||||| ||||||||    
T  30427446 gaccaaagccaaaattggatgaaagtgcagggactaaacaaacatttaa 30427398  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 2892009 - 2891972
Alignment:
Q  63 gaaagtgcatagactaaacacacatttaagccaaaatt 100  Q
    |||||||||  |||||||||||||||||||||||||||    
T  2892009 gaaagtgcagggactaaacacacatttaagccaaaatt 2891972  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 46972576 - 46972618
Alignment:
Q  52 caaaattggatgaaagtgcatagactaaacacacatttaagcc 94  Q
    ||||||||| ||||||||||  |||||||||||||||||||||    
T  46972576 caaaattgggtgaaagtgcagggactaaacacacatttaagcc 46972618  T

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