View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7358_low_2 (Length: 580)
Name: NF7358_low_2
Description: NF7358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7358_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 560
Target Start/End: Complemental strand, 36930816 - 36930266
Alignment:
| Q |
14 |
ctttacctaaaagtaggaggaaaaagaaagttgtcccgaaagatagnnnnnnncgttgtttaaatatcattacttggttgtataatagagacccgaaact |
113 |
Q |
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| T |
36930816 |
ctttacccaaaagaacgaggaaaaagaaagttgttccgaaagatagttttttttgttgtttaaatatcattacttggttgtataatagagacccgaaact |
36930717 |
T |
|
| Q |
114 |
tggttgctccacaccacacagctattgttgtaccttgttaatgttgttttccgtgattcagccatgcgcgcattgaaggtccaggcatagcagctatccc |
213 |
Q |
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| T |
36930716 |
tggttgccccacaccacacagctattgttgtaccttgttaatgttgttttccgtcattcagccatgcacgcattgaaggtccaggcatagcagctatccc |
36930617 |
T |
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| Q |
214 |
attcttatgaaattattttgatgtgaaataatatgttattcgatttttatatgtattttgtttatggttgtcccacactacactacatagctgttttcct |
313 |
Q |
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| T |
36930616 |
attcttatgaaattattttgatgtgaaataatatgttattcgatttttatatgtatttagtttatggttgtcccacactacac-----agctgttttcct |
36930522 |
T |
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| Q |
314 |
aaatgatatcgtagctatcccactctcatgtgtgtgttcattctattccaaacatcatgatgcagaagcaatttgtcttg------------ggaatatt |
401 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36930521 |
taatggtatcgtagctatcccactctcatgtgtgtgttcattccattccaaacatcatgatgcagaagcaatttgtcttggctagtaaattaggaatatt |
36930422 |
T |
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| Q |
402 |
tgcatatccaaacaaaaaagatggggttgggggctagcttttagaagaatttgacttgtcaatgcatgctgcactggcgtagcaatagctgga--acacc |
499 |
Q |
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|||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36930421 |
tgcagatccaaaaaaaaaa-----agatgggggctagcttttagaagaatttgacttgtcaatgcatgctgcactggcgtagcaatagctggaacacacg |
36930327 |
T |
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| Q |
500 |
cttaaagactttggatttaagtgattagagttaagttggatcaatcaatagttttgcttag |
560 |
Q |
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| T |
36930326 |
ctcaaagactttggatttaagtgattagagttaagttgaatcaatcaatagttttgcttag |
36930266 |
T |
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