View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7358_low_3 (Length: 289)

Name: NF7358_low_3
Description: NF7358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7358_low_3
NF7358_low_3
[»] chr5 (16 HSPs)
chr5 (17-272)||(41367319-41367574)
chr5 (111-272)||(31177509-31177670)
chr5 (111-272)||(31187572-31187733)
chr5 (115-272)||(31226045-31226202)
chr5 (115-249)||(41370027-41370161)
chr5 (175-251)||(41317187-41317263)
chr5 (123-272)||(41333140-41333289)
chr5 (136-249)||(41287355-41287468)
chr5 (175-249)||(41325253-41325327)
chr5 (175-272)||(41311371-41311468)
chr5 (146-237)||(41311706-41311799)
chr5 (136-237)||(41305513-41305614)
chr5 (123-251)||(41329228-41329356)
chr5 (120-251)||(41337968-41338099)
chr5 (4-69)||(31187445-31187510)
chr5 (167-237)||(41333428-41333500)
[»] chr4 (1 HSPs)
chr4 (137-255)||(17248415-17248533)
[»] chr3 (2 HSPs)
chr3 (188-243)||(23024152-23024207)
chr3 (188-240)||(23036050-23036102)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 41367574 - 41367319
Alignment:
Q  17 attattgggagatttgaatcttatttgctacttttatcaaaaccattctccaaatcaggaaattgaacatttgttaacatatatgcttaggcaaacatat 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41367574 attattgggagatatgaatcttatttgctacttttatcaaaaccattctccaaatcaggaaattgaacatttgttaacatatatgcttaggcaaacatat 41367475  T
Q  117 atcaaggacgacgaataaaaggaatcaagcataagtcatgttctcttcctactgcaagcccaaatgactccgtcatatccaattcttcattcttcattcc 216  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41367474 atcaaggacgacgaatgaaaggaatcaagcataagtcatgttttcttcctactgcaagcccaaatgactccgtcatatctaattcttcattcttcattcc 41367375  T
Q  217 atttggaagcttccaatcaaaatggtaaagtaactgagctaaaggtagctctatgt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41367374 atttggaagcttccaatcaaaatggtaaagtaactgagctaaaggtagctctatgt 41367319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 272
Target Start/End: Original strand, 31177509 - 31177670
Alignment:
Q  111 acatatatcaaggacgacgaataaaaggaatcaagcataagtcatgttctcttcctactgcaagcccaaatgactccgtcatatccaattcttcattctt 210  Q
    |||||||| || |||||||| | | |||||||||||||| |||||||| |||| |||| ||||||||||||||||| |||||||| | ||||||||||||    
T  31177509 acatatattaaagacgacgagttataggaatcaagcataggtcatgttttcttactacagcaagcccaaatgactcagtcatatctagttcttcattctt 31177608  T
Q  211 cattccatttggaagcttccaatcaaaatggtaaagtaactgagctaaaggtagctctatgt 272  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| | ||| ||||| ||||    
T  31177609 cattccattaggaagcttccaatcaaagtggtaaagtaactgagcaagaggcagctcaatgt 31177670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 272
Target Start/End: Original strand, 31187572 - 31187733
Alignment:
Q  111 acatatatcaaggacgacgaataaaaggaatcaagcataagtcatgttctcttcctactgcaagcccaaatgactccgtcatatccaattcttcattctt 210  Q
    |||||||| ||||||||||| ||| |||||||||||||| |||||||| ||||||||  || | |||||||||||| |||||||| | ||||||||||||    
T  31187572 acatatattaaggacgacgagtaataggaatcaagcataggtcatgttttcttcctatagccatcccaaatgactcagtcatatctagttcttcattctt 31187671  T
Q  211 cattccatttggaagcttccaatcaaaatggtaaagtaactgagctaaaggtagctctatgt 272  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| | ||| ||||| ||||    
T  31187672 cattccattaggaagcttccaatcaaagtggtaaagtaactgagcaagaggcagctcaatgt 31187733  T

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Target: chr5; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 115 - 272
Target Start/End: Complemental strand, 31226202 - 31226045
Alignment:
Q  115 atatcaaggacgacgaataaaaggaatcaagcataagtcatgttctcttcctactgcaagcccaaatgactccgtcatatccaattcttcattcttcatt 214  Q
    |||| ||||||||||| | | |||||||||||| | ||||| || ||||||||| | ||||||||||||||| |||||||| | ||||||||||||||||    
T  31226202 atattaaggacgacgagtgataggaatcaagcacaggtcattttttcttcctacagaaagcccaaatgactcagtcatatctagttcttcattcttcatt 31226103  T
Q  215 ccatttggaagcttccaatcaaaatggtaaagtaactgagctaaaggtagctctatgt 272  Q
    ||||| ||||||||||||||||| ||||||||||||||||| | ||| ||||| ||||    
T  31226102 ccattaggaagcttccaatcaaagtggtaaagtaactgagcaagaggcagctcaatgt 31226045  T

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Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 41370161 - 41370027
Alignment:
Q  115 atatcaaggacgacgaataaaaggaatcaagcataagtcatgttctcttcctactgcaagcccaaatgactccgtcatatccaattcttcattcttcatt 214  Q
    |||||||  ||||||||||| ||||||||||||||| |||| || |||| || ||| || ||||||||| || |||||||||||||||||||||||||||    
T  41370161 atatcaaatacgacgaataataggaatcaagcataaatcatattttcttactgctgtaatcccaaatgattcagtcatatccaattcttcattcttcatt 41370062  T
Q  215 ccatttggaagcttccaatcaaaatggtaaagtaa 249  Q
     |||| ||||||||||||||||| |||||||||||    
T  41370061 tcattgggaagcttccaatcaaagtggtaaagtaa 41370027  T

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Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 41317263 - 41317187
Alignment:
Q  175 cccaaatgactccgtcatatccaattcttcattcttcattccatttggaagcttccaatcaaaatggtaaagtaact 251  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||    
T  41317263 cccaaatgactcagtcatatccaattcttcattcttcattccattgggaagcttccaatcaaagtgataaagtaact 41317187  T

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Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 123 - 272
Target Start/End: Complemental strand, 41333289 - 41333140
Alignment:
Q  123 gacgacgaataaaaggaatcaagcataagtcatgttctcttcctactgcaagcccaaatgactccgtcatatccaattcttcattcttcattccatttgg 222  Q
    |||||||| ||| |||||| || ||||  || || | ||||||||| | || |||||||||||| |||||||| | ||||||||||||||||  ||| ||    
T  41333289 gacgacgagtaataggaattaaacatagatcgtgctttcttcctacagtaatcccaaatgactcggtcatatctagttcttcattcttcattttattggg 41333190  T
Q  223 aagcttccaatcaaaatggtaaagtaactgagctaaaggtagctctatgt 272  Q
    ||||||||||||||| ||| ||||||| ||||| | ||||||||| ||||    
T  41333189 aagcttccaatcaaagtggcaaagtaattgagcaagaggtagctcaatgt 41333140  T

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Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 41287468 - 41287355
Alignment:
Q  136 aggaatcaagcataagtcatgttctcttcctactgcaagcccaaatgactccgtcatatccaattcttcattcttcattccatttggaagcttccaatca 235  Q
    |||||| || |||| |||||||| ||||||||| | || |||||||||||| |||||||| | |||||||  ||||||||||||  ||||||||||||||    
T  41287468 aggaattaatcataggtcatgttttcttcctacagtaatcccaaatgactcagtcatatcaagttcttcacacttcattccattgagaagcttccaatca 41287369  T
Q  236 aaatggtaaagtaa 249  Q
    || || ||||||||    
T  41287368 aagtgataaagtaa 41287355  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 41325327 - 41325253
Alignment:
Q  175 cccaaatgactccgtcatatccaattcttcattcttcattccatttggaagcttccaatcaaaatggtaaagtaa 249  Q
    |||||||||||| |||||||| | ||||||||||||||||  ||| ||||||||||||||||| |||||||||||    
T  41325327 cccaaatgactcggtcatatctagttcttcattcttcattttattgggaagcttccaatcaaagtggtaaagtaa 41325253  T

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Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 41311468 - 41311371
Alignment:
Q  175 cccaaatgactccgtcatatccaattcttcattcttcattccatttggaagcttccaatcaaaatggtaaagtaactgagctaaaggtagctctatgt 272  Q
    |||||||||||| | |||||| | ||||||||||||||||  ||| |||||||||||||||||  |||||||||| ||||| | ||||||||| ||||    
T  41311468 cccaaatgactcagccatatctagttcttcattcttcattttattgggaagcttccaatcaaaccggtaaagtaattgagcaagaggtagctcaatgt 41311371  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 41311799 - 41311706
Alignment:
Q  146 cataagtcatgttctcttcctactgcaagcccaaatgactcc--gtcatatccaattcttcattcttcattccatttggaagcttccaatcaaa 237  Q
    |||| |||||||| |||||| |||| | |||||||||||||   |||||||| | ||||||||| ||||||||||| |||||||| ||||||||    
T  41311799 cataggtcatgttttcttccgactgtatgcccaaatgactctcagtcatatcaagttcttcattattcattccattgggaagctttcaatcaaa 41311706  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 41305614 - 41305513
Alignment:
Q  136 aggaatcaagcataagtcatgttctcttcctactgcaagcccaaatgactccgtcatatccaattcttcattcttcattccatttggaagcttccaatca 235  Q
    ||||||||| |||| ||| |||| |||||||||   ||||||||||||||| |||||||| | ||||| ||   ||||||| || |||||||||||||||    
T  41305614 aggaatcaaacataggtcgtgttttcttcctacactaagcccaaatgactcggtcatatcaagttcttgatggctcattccgttgggaagcttccaatca 41305515  T
Q  236 aa 237  Q
    ||    
T  41305514 aa 41305513  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 41329356 - 41329228
Alignment:
Q  123 gacgacgaataaaaggaatcaagcataagtcatgttctcttcctactgcaagcccaaatgactccgtcatatccaattcttcattcttcattccatttgg 222  Q
    |||||||| ||  |||||| || |||| ||| |||| ||| ||||| | || ||||||  |||| |||||||| | ||||| ||   |||||||||| ||    
T  41329356 gacgacgagtagtaggaattaaacataggtcgtgttttctacctacagtaatcccaaaaaactcagtcatatcaagttcttgatggctcattccattggg 41329257  T
Q  223 aagcttccaatcaaaatggtaaagtaact 251  Q
    ||||||||||||||| || ||||||||||    
T  41329256 aagcttccaatcaaagtgataaagtaact 41329228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 251
Target Start/End: Complemental strand, 41338099 - 41337968
Alignment:
Q  120 aaggacgacgaataaaaggaatcaagcataagtcatgttctcttcctactgcaagcccaaatgactccgtcatatccaattcttcattcttcattccatt 219  Q
    ||||||||||| ||| ||| ||||| ||||  ||||| | | |||| || | ||| |||||||| || |||||||| | ||||| ||   ||||||||||    
T  41338099 aaggacgacgagtaatagggatcaaacatacatcatgcttttttccaacagtaagtccaaatgattcagtcatatcaagttcttgatggctcattccatt 41338000  T
Q  220 tggaagcttccaatcaaaatggtaaagtaact 251  Q
    |||||| ||||||||||| || ||||| ||||    
T  41337999 tggaagtttccaatcaaagtgataaagcaact 41337968  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 31187445 - 31187510
Alignment:
Q  4 gaacaccatacatattattgggagatttgaatcttatttgctacttttatcaaaaccattctccaa 69  Q
    ||||| ||||||  |||||||||||  ||||| ||||||||||| ||||||| || ||||||||||    
T  31187445 gaacatcatacaccttattgggagaaatgaatgttatttgctacatttatcacaatcattctccaa 31187510  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 41333500 - 41333428
Alignment:
Q  167 actgcaagcccaaatgactccg--tcatatccaattcttcattcttcattccatttggaagcttccaatcaaa 237  Q
    |||| |||||||||||||||    ||||||| | ||||||||| ||||||||||| |||||||| ||||||||    
T  41333500 actgtaagcccaaatgactctcaatcatatcaagttcttcattattcattccattgggaagctttcaatcaaa 41333428  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 137 - 255
Target Start/End: Original strand, 17248415 - 17248533
Alignment:
Q  137 ggaatcaagcataagtcatgttctcttcctactgcaagcccaaatgactccgtcatatccaattcttcattcttcattccatttggaagcttccaatcaa 236  Q
    ||||||||||| | ||||| || ||||| || || || |||||||||||| |||||||| |  ||||||||||||||| |||| ||||||||||||||||    
T  17248415 ggaatcaagcacaggtcattttttcttcttattgtaatcccaaatgactcggtcatatctagatcttcattcttcatttcattgggaagcttccaatcaa 17248514  T
Q  237 aatggtaaagtaactgagc 255  Q
    ||||||||||||| |||||    
T  17248515 aatggtaaagtaattgagc 17248533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 23024152 - 23024207
Alignment:
Q  188 gtcatatccaattcttcattcttcattccatttggaagcttccaatcaaaatggta 243  Q
    ||||| |||||||||||| | || |||||||| |||||||||||||||||||||||    
T  23024152 gtcatgtccaattcttcacttttgattccattaggaagcttccaatcaaaatggta 23024207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 23036050 - 23036102
Alignment:
Q  188 gtcatatccaattcttcattcttcattccatttggaagcttccaatcaaaatg 240  Q
    ||||| |||||||||||| | || |||||| ||||||||||||| ||||||||    
T  23036050 gtcatgtccaattcttcacttttgattccacttggaagcttccagtcaaaatg 23036102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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