View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7359_high_11 (Length: 404)
Name: NF7359_high_11
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7359_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 5173166 - 5173546
Alignment:
| Q |
1 |
actcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
5173166 |
actcccaagttggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaagatat------attcctt |
5173259 |
T |
|
| Q |
101 |
cctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctc |
200 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173260 |
ccaagtattacctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctc |
5173359 |
T |
|
| Q |
201 |
ataataatttctcaggtgtgttacctaaacaactggccacagattgcgataatttacaacacttgattctctccaacaactctctacgtgggaatattcc |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173360 |
ataataatttctcaggtgagttacctaaacaactggccacatattgcgataatttacaatacttgattctctccaacaactctctacgtgggaatattcc |
5173459 |
T |
|
| Q |
301 |
taaatttgtgaatatggaagttttatttctcaataataacaactttagtggaacacttgatgatgtattgggaaagggaaataatac |
387 |
Q |
| |
|
||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173460 |
taaatttgtgagtatggaagttttattactgaataataacaactttagtggaacacttgatgatgtattgggaaagggaaataatac |
5173546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 4842362 - 4841977
Alignment:
| Q |
1 |
actcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4842362 |
actcccaagttggttgataaataatgttggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaagatattggtatattcctt |
4842263 |
T |
|
| Q |
101 |
cctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctc |
200 |
Q |
| |
|
|||||| |||||||| |||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
4842262 |
cctagtgttacctatatgaatttttcatcaaataactttgaaggaaatataccttcatcaatttgtaagatgaaaaaacttaagtacttggacctctctc |
4842163 |
T |
|
| Q |
201 |
ataataatttctcaggtgtgttacctaaacaactggccacagattgcgataatttacaacacttgattctctccaacaactctctacgtgggaatattcc |
300 |
Q |
| |
|
| ||| |||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4842162 |
agaatcatttctcaggtgagttacctaaacaactggccgcagattgcaataatttacaatacttgattctctccaacaactctctatgtgggaatattcc |
4842063 |
T |
|
| Q |
301 |
taaatttgtgaatatggaagttttatttctcaataataacaactttagtggaacacttgatgatgtattgggaaagggaaataata |
386 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4842062 |
taaatttgtgaatatggtagttttatttctcaataataacaactttagtggaacacttgatgatgtattgggaaagggaaataata |
4841977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 371
Target Start/End: Original strand, 5182497 - 5182868
Alignment:
| Q |
3 |
tcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcc |
102 |
Q |
| |
|
||||||||||||||||| ||||| || ||| | ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5182497 |
tcccaagttggttgatagataatcataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcc |
5182596 |
T |
|
| Q |
103 |
tagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctcat |
202 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
5182597 |
tagtgttaagtatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaacaacttgagtacttggacctctctcag |
5182696 |
T |
|
| Q |
203 |
aataatttctcaggtgtgttacctaaacaactggccacagattgcgataatttacaacacttgattctctccaacaactctctacgtgggaatattccta |
302 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||| ||||| |||||| ||||| | |
|
|
| T |
5182697 |
aatcatttctcaggtgagttacctaaacaactggccacaggttgtgataatttacaatacttgaagctctccaacaactttctacatgggaagattccaa |
5182796 |
T |
|
| Q |
303 |
aattt---gtgaatatggaagttttatttctcaataataacaactttagtggaacacttgatgatgtattgg |
371 |
Q |
| |
|
|||| ||||||||| | |||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5182797 |
gattttcagtgaatatgtttgggttatttcttaataataacaactttagtggaacacttgaagatgtattgg |
5182868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 36 - 375
Target Start/End: Original strand, 5214087 - 5214435
Alignment:
| Q |
36 |
aatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcctagtattacctatttgaacttttcaatgaatag |
135 |
Q |
| |
|
||||||||||| |||||| ||||| ||| |||||||| ||||| |||||||||||||||||||||||||| |||||||| |||| |||||| |||| |
|
|
| T |
5214087 |
aatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataa |
5214186 |
T |
|
| Q |
136 |
ctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctcataataatttctcaggtgtgttacctaaacaactg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
5214187 |
ctttgaaggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagttacctaaacaactg |
5214286 |
T |
|
| Q |
236 |
gccacagattgcgataatttacaacacttgattctctccaacaactctctacgtgggaatattcctaaattt---------gtgaatatggaagttttat |
326 |
Q |
| |
|
||||||| ||| |||||||||||| |||||| ||||||||||||| ||||| |||||| |||||||||||| ||||| ||||| |||||| |
|
|
| T |
5214287 |
gccacaggttgtgataatttacaatacttgaagctctccaacaactttctacatgggaacattcctaaattttataattccatgaatgtggaatttttat |
5214386 |
T |
|
| Q |
327 |
ttctcaataataacaactttagtggaacacttgatgatgtattgggaaa |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5214387 |
ttctcaataataacaactttagtggaacacttgaagatgtattgggaaa |
5214435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 5195904 - 5196278
Alignment:
| Q |
10 |
ttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcctagtatt |
109 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||||||| |||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| | || |
|
|
| T |
5195904 |
ttggttgatacataatgatgacatgatatatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatatcggtatattccttcctaatgtt |
5196003 |
T |
|
| Q |
110 |
acctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctcataataatt |
209 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||| ||| ||||||| ||| ||| |
|
|
| T |
5196004 |
acctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaacaacttcaactcttggacttctctcaaaatcatt |
5196103 |
T |
|
| Q |
210 |
tctcaggtgtgttacctaaacaactggccacagattgcgataatttacaacacttgattctctccaacaactctctacgtgggaatattcctaaattt-- |
307 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||| ||||| |||||| ||||| | |||| |
|
|
| T |
5196104 |
tctcaggtgagttacctaaacaactggccacaggttgtgataatttacaatacttgaagctctccaacaactttctacatgggaacattccaagattttg |
5196203 |
T |
|
| Q |
308 |
-------gtgaatatggaagttttatttctcaataataacaactttagtggaacacttgatgatgtattgggaaa |
375 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
5196204 |
taattcagtgaatatgtttgggttatttcttaataataacaactttagtggaacacttgaagatgtattaggaaa |
5196278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 4 - 375
Target Start/End: Original strand, 5160253 - 5160630
Alignment:
| Q |
4 |
cccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcct |
103 |
Q |
| |
|
|||||||||||||||| ||||| || ||| | ||||||||| |||||||||||||||| ||||| ||||| | ||||| ||| | |||||||||| |
|
|
| T |
5160253 |
cccaagttggttgatacataatcataacattaattatttggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttcca |
5160352 |
T |
|
| Q |
104 |
agtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctcata |
203 |
Q |
| |
|
||| ||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||| ||||||||||||| |
|
|
| T |
5160353 |
agtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagataaaaaaacttttgctcttggacctctctcata |
5160452 |
T |
|
| Q |
204 |
ataatttctcaggtgtgttacctaaacaactggccacagattgcgataatttacaacacttgattctctccaacaactctctacgtgggaatattcctaa |
303 |
Q |
| |
|
|| ||||||| |||| |||||| ||||||||||||||||||| |||| ||||| | ||||| ||||| |||||| |||| |||| |||||||| || |
|
|
| T |
5160453 |
atcatttctcgggtgagttaccaaaacaactggccacagattctgatagtttactatacttgtccgtctccgacaactttctaagtggtaatattcccaa |
5160552 |
T |
|
| Q |
304 |
atttgtgaat------atggaagttttatttctcaataataacaactttagtggaacacttgatgatgtattgggaaa |
375 |
Q |
| |
|
|||| ||| ||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5160553 |
attttgtaatttagggatgaaaaatttatttcttaataataacaactttagtggaacacttgaagatgtattgggaaa |
5160630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 10 - 175
Target Start/End: Original strand, 7142441 - 7142606
Alignment:
| Q |
10 |
ttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcctagtatt |
109 |
Q |
| |
|
|||||||||| |||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
7142441 |
ttggttgatacataatgatgggatacaacatttggatatatcaaacaacaatttaagtggtttgcttccagaagatattggtatattccttcctagtgtt |
7142540 |
T |
|
| Q |
110 |
acctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaa |
175 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
7142541 |
gactatctgaacttttcattgaatagctttcaaggaaatataccttaatcaattggtatgatgaaa |
7142606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 151
Target Start/End: Complemental strand, 4856834 - 4856686
Alignment:
| Q |
3 |
tcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcc |
102 |
Q |
| |
|
||||||||| ||||||| ||||| || ||| | ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4856834 |
tcccaagttcgttgatagataatcataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcc |
4856735 |
T |
|
| Q |
103 |
tagtattacctatttgaacttttcaatgaatagctttgaaggaaatata |
151 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
4856734 |
tagtgttacctatttgaacatttcatggaatagctttgaaggaaatata |
4856686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 177 - 375
Target Start/End: Complemental strand, 4856686 - 4856479
Alignment:
| Q |
177 |
atcttgagtactttgacctctctcataataatttctcaggtgtgttacctaaacaactggccacagattgcgataatttacaacacttgattctctccaa |
276 |
Q |
| |
|
||||| ||||||| ||||||||||| ||| |||||||||||| ||||||| ||||| |||||||||| | || | |||||| |||||| |||||||| |
|
|
| T |
4856686 |
atcttaagtacttggacctctctcagaatcatttctcaggtgagttacctgaacaattggccacagagttgaatgagttacaatacttgaagctctccaa |
4856587 |
T |
|
| Q |
277 |
caactctctacgtgggaatattcctaaatttgtgaa--tatggaagtt-------ttatttctcaataataacaactttagtggaacacttgatgatgta |
367 |
Q |
| |
|
||||| ||| || |||||||||||||||||| || || ||| || ||||| |||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
4856586 |
caactttctccgagggaatattcctaaattttgtaatttagcgaacttgctttggttattgctcagtaataacaactttagtggaacacttgaagatgta |
4856487 |
T |
|
| Q |
368 |
ttgggaaa |
375 |
Q |
| |
|
|||||||| |
|
|
| T |
4856486 |
ttgggaaa |
4856479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 307
Target Start/End: Original strand, 7142617 - 7142717
Alignment:
| Q |
207 |
atttctcaggtgtgttacctaaacaactggccacagattgcgataatttacaacac-ttgattctctccaacaactctctacgtgggaatattcctaaat |
305 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||| |||||| |||| |||| ||||| ||||| ||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
7142617 |
atttctcgggtgagttacctaaacaattggccaaagattgtgatagttta-aacaccttgatcctctccaacaactttctaagtggtaatattcctaaat |
7142715 |
T |
|
| Q |
306 |
tt |
307 |
Q |
| |
|
|| |
|
|
| T |
7142716 |
tt |
7142717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 5203302 - 5203345
Alignment:
| Q |
3 |
tcccaagttggttgataaataatgatggcatacaatatttggat |
46 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
5203302 |
tcccaagttggttgatacataatgatgatatacaatatttggat |
5203345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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