View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7359_high_15 (Length: 286)
Name: NF7359_high_15
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7359_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 33298346 - 33298209
Alignment:
| Q |
8 |
atattattctgcatgcgtaacaggatcaatctcattactaagcaatgtccccaacaagagagaaaccactgccaccggtcctatagctatatcgcgagaa |
107 |
Q |
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| T |
33298346 |
atattcttctgcatgcgtaacaggatcaatctcattactaagcaatgtccccaacaagagagataccactgccactggtcctattgctatatcgcgagaa |
33298247 |
T |
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| Q |
108 |
ctacccatgaaagcataaataagtggtggaacaaagct |
145 |
Q |
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| T |
33298246 |
ctacccatgaaagcataaataagtggtggaacaaagct |
33298209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 33298134 - 33298083
Alignment:
| Q |
220 |
ttggaattgaagaaaagagtcttacatagtccatactgtggtgccaaatgtg |
271 |
Q |
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| T |
33298134 |
ttggaattgaagaaaagagtcttacatagtccatactgtggtgccaaatgtg |
33298083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 25719314 - 25719215
Alignment:
| Q |
54 |
gtccccaacaagagagaaaccactgccaccggtcctatagctatatcgcgagaactacccatgaaagcataaataagtggtggaacaaagcttgagtctg |
153 |
Q |
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| T |
25719314 |
gtccccaacaagagagaaaccacggccactggccctatcgcaatgtcacgggaactacccatgacggcataaatcagtggtggaacaaagcttgaatctg |
25719215 |
T |
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