View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7359_high_17 (Length: 278)

Name: NF7359_high_17
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7359_high_17
NF7359_high_17
[»] chr8 (15 HSPs)
chr8 (21-257)||(278952-279188)
chr8 (21-257)||(636664-636900)
chr8 (21-257)||(822467-822703)
chr8 (178-260)||(2623235-2623317)
chr8 (178-275)||(41456053-41456150)
chr8 (181-247)||(13231838-13231904)
chr8 (171-278)||(35558-35665)
chr8 (164-278)||(279736-279849)
chr8 (164-278)||(636003-636116)
chr8 (164-278)||(821806-821919)
chr8 (191-266)||(13231469-13231544)
chr8 (171-226)||(30204188-30204242)
chr8 (142-233)||(34646814-34646905)
chr8 (178-276)||(7043100-7043198)
chr8 (178-255)||(33231130-33231207)
[»] chr1 (11 HSPs)
chr1 (140-276)||(25476032-25476168)
chr1 (144-276)||(28651686-28651817)
chr1 (165-277)||(27702561-27702673)
chr1 (145-272)||(28652420-28652546)
chr1 (143-278)||(48621820-48621955)
chr1 (152-250)||(48621153-48621251)
chr1 (144-278)||(27818730-27818862)
chr1 (146-224)||(44633348-44633426)
chr1 (217-278)||(27576898-27576959)
chr1 (180-276)||(44634050-44634146)
chr1 (181-225)||(27573591-27573635)
[»] chr2 (9 HSPs)
chr2 (138-276)||(35063611-35063749)
chr2 (171-278)||(38356839-38356946)
chr2 (164-250)||(35064389-35064475)
chr2 (164-278)||(40056315-40056429)
chr2 (171-278)||(19601473-19601587)
chr2 (131-278)||(1299968-1300113)
chr2 (171-278)||(29453623-29453730)
chr2 (204-278)||(1300854-1300928)
chr2 (180-250)||(27060338-27060408)
[»] chr3 (8 HSPs)
chr3 (138-278)||(45004707-45004847)
chr3 (178-270)||(45005508-45005600)
chr3 (171-242)||(50766026-50766097)
chr3 (178-276)||(50823969-50824067)
chr3 (178-276)||(50851793-50851891)
chr3 (164-278)||(45145856-45145969)
chr3 (164-256)||(45146663-45146755)
chr3 (163-276)||(51489821-51489934)
[»] chr4 (12 HSPs)
chr4 (131-278)||(50071965-50072112)
chr4 (141-249)||(50071275-50071383)
chr4 (164-247)||(12007487-12007570)
chr4 (164-249)||(39631362-39631447)
chr4 (194-278)||(12007919-12008003)
chr4 (171-251)||(26305563-26305643)
chr4 (164-278)||(2486923-2487038)
chr4 (152-247)||(5473139-5473233)
chr4 (131-246)||(39484363-39484478)
chr4 (191-261)||(5474862-5474932)
chr4 (179-245)||(32641203-32641269)
chr4 (171-219)||(26439911-26439959)
[»] chr5 (10 HSPs)
chr5 (164-278)||(24153194-24153308)
chr5 (131-278)||(17115702-17115849)
chr5 (135-278)||(24153914-24154057)
chr5 (131-227)||(35145618-35145714)
chr5 (146-265)||(31079702-31079821)
chr5 (171-250)||(17116465-17116544)
chr5 (163-278)||(40816207-40816322)
chr5 (174-278)||(34597623-34597727)
chr5 (166-224)||(29108704-29108762)
chr5 (163-267)||(9164755-9164858)
[»] chr6 (7 HSPs)
chr6 (17-118)||(13475962-13476063)
chr6 (167-276)||(19109572-19109681)
chr6 (131-278)||(26670623-26670768)
chr6 (163-250)||(12029353-12029440)
chr6 (163-250)||(30921571-30921658)
chr6 (204-278)||(26674037-26674111)
chr6 (18-124)||(14020030-14020136)
[»] scaffold0119 (1 HSPs)
scaffold0119 (131-278)||(26-171)
[»] scaffold0301 (2 HSPs)
scaffold0301 (168-250)||(6470-6552)
scaffold0301 (152-223)||(7855-7926)
[»] chr7 (6 HSPs)
chr7 (180-227)||(4833190-4833237)
chr7 (178-227)||(21516216-21516265)
chr7 (178-227)||(21516439-21516488)
chr7 (178-227)||(21516662-21516711)
chr7 (143-202)||(17738996-17739055)
chr7 (188-246)||(35263746-35263804)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 279188 - 278952
Alignment:
Q  21 aaatttcaaaatcgtttgcaaaagtctaaagaaacaacaaagaagaaggtttgtattttcccaattcaagaatccccttaaaagttaactgaaaatttcc 120  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| |||||||| |    
T  279188 aaatttcaaaatcgtttgcaaaaatctaaagaaacaacaaagaagaaggtttgtcttttcccaattcaagaatcctgttaaaagttaacagaaaattttc 279089  T
Q  121 ttaaaaaactaaaattgatggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaa 220  Q
    | |||||| ||||||||| ||||||||||| |||||||||||||||||| |||||| || ||||||| |||||||||||||||||| |||||||||||||    
T  279088 taaaaaaattaaaattgaaggaaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaa 278989  T
Q  221 actagagaggatgtcagtgtcattttaatatacctca 257  Q
    |||| || ||||||||||||||| |||||| ||||||    
T  278988 actaaaggggatgtcagtgtcatcttaatagacctca 278952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 636664 - 636900
Alignment:
Q  21 aaatttcaaaatcgtttgcaaaagtctaaagaaacaacaaagaagaaggtttgtattttcccaattcaagaatccccttaaaagttaactgaaaatttcc 120  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| |||||||| |    
T  636664 aaatttcaaaatcgtttgcaaaaatctaaagaaacaacaaagaagaaggtttgtcttttcccaattcaagaatcctgttaaaagttaacagaaaattttc 636763  T
Q  121 ttaaaaaactaaaattgatggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaa 220  Q
    | |||||| ||||||||| ||||||||||| |||||||||||||||||| |||||| || ||||||| |||||||||||||||||| |||||||||||||    
T  636764 taaaaaaattaaaattgaaggaaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaa 636863  T
Q  221 actagagaggatgtcagtgtcattttaatatacctca 257  Q
    |||| || ||||||||||||||| |||||| ||||||    
T  636864 actaaaggggatgtcagtgtcatcttaatagacctca 636900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 822467 - 822703
Alignment:
Q  21 aaatttcaaaatcgtttgcaaaagtctaaagaaacaacaaagaagaaggtttgtattttcccaattcaagaatccccttaaaagttaactgaaaatttcc 120  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| |||||||| |    
T  822467 aaatttcaaaatcgtttgcaaaaatctaaagaaacaacaaagaagaaggtttgtcttttcccaattcaagaatcctgttaaaagttaacagaaaattttc 822566  T
Q  121 ttaaaaaactaaaattgatggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaa 220  Q
    | |||||| ||||||||| ||||||||||| |||||||||||||||||| |||||| || ||||||| |||||||||||||||||| |||||||||||||    
T  822567 taaaaaaattaaaattgaaggaaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaa 822666  T
Q  221 actagagaggatgtcagtgtcattttaatatacctca 257  Q
    |||| || ||||||||||||||| |||||| ||||||    
T  822667 actaaaggggatgtcagtgtcatcttaatagacctca 822703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 2623235 - 2623317
Alignment:
Q  178 tctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcaggg 260  Q
    ||||||||||||||||| ||||||| |||||||||||||||||| ||||  |||||||||||||||||||||| |||| ||||    
T  2623235 tctatttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaaccttaggg 2623317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 41456053 - 41456150
Alignment:
Q  178 tctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatgtaatt 275  Q
    ||||||| | || |||||||||||| ||||||||||||| |||| |||||  ||||||||||||||||| ||| ||||||||| |||||| |||||||    
T  41456053 tctattttacgagaacttaagggaggttagtgtaagtttaaaaattagaggagatgtcagtgtcattttcatagacctcaggggaggtgagtgtaatt 41456150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 13231838 - 13231904
Alignment:
Q  181 atttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcatttta 247  Q
    ||||||||| |||| ||||||| |||||||||||||||||| ||||| || ||||||||||||||||    
T  13231838 atttgatgagaactaaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcatttta 13231904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 35665 - 35558
Alignment:
Q  171 gtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatg 270  Q
    |||||| | |||||||| ||||||||||| || ||| ||||||||||||||||| | ||| |||  ||||||| |||||| | |||| || || ||||||    
T  35665 gtgtttgtatatttgataaaaacttaaggaaggttaatgtaagttttaaaactaaaaagggtgtttgtgtcatattaatagatctcatgggagatgaatg 35566  T
Q  271 taattttc 278  Q
    ||||||||    
T  35565 taattttc 35558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 279736 - 279849
Alignment:
Q  164 aagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaag 263  Q
    |||||| |||||| |||| ||||||||||||||| |||| |||| ||||||||||||| ||||| || |||  ||||||||| |||| | || |||| ||    
T  279736 aagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagag-gggtgtatgtgtcatttcaatagaacttaggggag 279834  T
Q  264 gtgaatgtaattttc 278  Q
    | | |||||||||||    
T  279835 gcggatgtaattttc 279849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 636116 - 636003
Alignment:
Q  164 aagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaag 263  Q
    |||||| |||||| |||| ||||||||||||||| |||| |||| ||||||||||||| ||||| || |||  ||||||||| |||| | || |||| ||    
T  636116 aagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagag-gggtgtatgtgtcatttcaatagaacttaggggag 636018  T
Q  264 gtgaatgtaattttc 278  Q
    | | |||||||||||    
T  636017 gcggatgtaattttc 636003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 821919 - 821806
Alignment:
Q  164 aagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaag 263  Q
    |||||| |||||| |||| ||||||||||||||| |||| |||| ||||||||||||| ||||| || |||  ||||||||| |||| | || |||| ||    
T  821919 aagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattagag-gggtgtatgtgtcatttcaatagaacttaggggag 821821  T
Q  264 gtgaatgtaattttc 278  Q
    | | |||||||||||    
T  821820 gcggatgtaattttc 821806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 13231544 - 13231469
Alignment:
Q  191 aacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtg 266  Q
    |||| ||||||| |||||| ||||||||||| || ||||||||| |||||||||||| || |||  ||||||||||    
T  13231544 aactaaagggaggttagtgaaagttttaaaattaaagaggatgtaagtgtcattttagtaaaccatagggaaggtg 13231469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 30204242 - 30204188
Alignment:
Q  171 gtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactaga 226  Q
    |||||||| |||||||| ||||||||| |||| |||||||||||||| ||||||||    
T  30204242 gtgtttatttatttgataaaaacttaa-ggaggttagtgtaagtttttaaactaga 30204188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 34646814 - 34646905
Alignment:
Q  142 aaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatg 233  Q
    ||||||||| || ||||||| |||| ||  |||||||| ||||||| | || |||| |||||   |||||||||||||||||||| ||||||    
T  34646814 aaaattaacggtattaatagagaagagatatgtttatccatttgataagaaattaaaggagaaaggtgtaagttttaaaactagaaaggatg 34646905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 7043198 - 7043100
Alignment:
Q  178 tctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatgtaattt 276  Q
    |||||||| |||||||||||||||| ||| | |   ||||||||||||||  | ||| |||| |||||||||| |||| |||| |||||| || |||||    
T  7043198 tctatttgttgaaaacttaagggaggttaatattcattttaaaactagaggtggtgttagtgccattttaataaaccttaggggaggtgagtgcaattt 7043100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 33231207 - 33231130
Alignment:
Q  178 tctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacct 255  Q
    ||||| ||||||||||| ||||||| ||  || | ||||||||| ||||| |||||  ||||||||||||||| ||||    
T  33231207 tctatatgatgaaaactaaagggaggtttatgcatgttttaaaattagaggggatgctagtgtcattttaatagacct 33231130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 276
Target Start/End: Original strand, 25476032 - 25476168
Alignment:
Q  140 ggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtg 239  Q
    ||||||||||| ||||||||||  |||||| |||||| | ||||| || ||||||| |||||| || ||||||||||||||||||||| |  ||||||||    
T  25476032 ggaaaattaacggtgttaatagataagggaggtgtttgtttatttcataaaaacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtg 25476131  T
Q  240 tcattttaatatacctcagggaaggtgaatgtaattt 276  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  25476132 tcattttaataaacctcaggggaggtgaatgtaattt 25476168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 144 - 276
Target Start/End: Complemental strand, 28651817 - 28651686
Alignment:
Q  144 aattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcat 243  Q
    ||||||| ||||||| || ||||||||||||  ||| |||| ||| ||| ||||||||| ||| |||||||||||||| ||||| || ||||||||||||    
T  28651817 aattaacggtgttaagagagaagggaagtgta-atcaattttatgtaaatttaagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcat 28651719  T
Q  244 tttaatatacctcagggaaggtgaatgtaattt 276  Q
    ||||||| ||||||||| |||||| ||||||||    
T  28651718 tttaatagacctcaggggaggtgattgtaattt 28651686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 27702673 - 27702561
Alignment:
Q  165 agggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaagg 264  Q
    ||||| |||||| |||||||||| |||||| ||||||  ||||||||| |||||||| || || |||||||||||||||||||||| |||| |||  ||     
T  27702673 agggaggtgtttgtctatttgataaaaactcaagggaagttagtgtaaattttaaaattatagtggatgtcagtgtcattttaataaaccttaggagaga 27702574  T
Q  265 tgaatgtaatttt 277  Q
    || ||||||||||    
T  27702573 tggatgtaatttt 27702561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 272
Target Start/End: Original strand, 28652420 - 28652546
Alignment:
Q  145 attaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcatt 244  Q
    |||||| ||||||| || |||||||| ||||  ||||||| || |||| ||||||||| |||||||||||||||||| ||||| || ||||| ||| |||    
T  28652420 attaacggtgttaagagagaagggaattgttagtctattttataaaaatttaagggaggttagtgtaagttttaaaaatagag-gggtgtcaatgttatt 28652518  T
Q  245 ttaatatacctcagggaaggtgaatgta 272  Q
    ||| || |||||| || |||||| ||||    
T  28652519 ttagtaaacctcaagggaggtgactgta 28652546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 48621820 - 48621955
Alignment:
Q  143 aaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtca 242  Q
    ||||||||||||||||||||||||||| ||| || | ||||  |  |||||||||||||| |||||||| ||||| |||||| || || |||  ||||||    
T  48621820 aaattaactgtgttaatagtgaagggaggtgattgtgtattacaaaaaaacttaagggaggttagtgtatgtttttaaactaaagggggtgttggtgtca 48621919  T
Q  243 ttttaatatacctcagggaaggtgaatgtaattttc 278  Q
    ||| || ||| || | || |||||| ||||||||||    
T  48621920 tttcaacatatcttaagggaggtgattgtaattttc 48621955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 48621251 - 48621153
Alignment:
Q  152 gtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaata 250  Q
    ||||||||| ||| |||| |||||| ||||||  |||| |||||||||||||||| |||||  ||||||||||||| || ||||||||| |||| ||||    
T  48621251 gtgttaataatgaggggatgtgtttgtctattacatgataacttaagggagattaatgtaaaatttaaaactagagggggtgtcagtgtgatttcaata 48621153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 278
Target Start/End: Complemental strand, 27818862 - 27818730
Alignment:
Q  144 aattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcat 243  Q
    ||||||| ||||||||| | |||||| |||| | ||||||  | ||||| ||||||||  | | |||| |||||||||||||||||| ||| ||||||||    
T  27818862 aattaacggtgttaata-tcaagggaggtgtctgtctattaaaggaaaatttaagggatgtaaatgtatgttttaaaactagagagggtgttagtgtcat 27818764  T
Q  244 tttaatatacctcagggaaggtgaatgtaattttc 278  Q
    ||| ||| | | ||||| |||||| ||||||||||    
T  27818763 tttcataaatc-caggggaggtgagtgtaattttc 27818730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 44633426 - 44633348
Alignment:
Q  146 ttaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaacta 224  Q
    ||||| ||||||||||  |||||| || ||| |||||||||  |  ||||||||||| |||||||||||||||||||||    
T  44633426 ttaacggtgttaatagaaaagggaggtatttgtctatttgaaaattacttaagggaggttagtgtaagttttaaaacta 44633348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 27576898 - 27576959
Alignment:
Q  217 taaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatgtaattttc 278  Q
    ||||||||||| ||||||||||||||||||| || |||| |||| |||||  ||||||||||    
T  27576898 taaaactagaggggatgtcagtgtcattttagtaaaccttaggggaggtgtgtgtaattttc 27576959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 44634050 - 44634146
Alignment:
Q  180 tatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatgtaattt 276  Q
    |||||||||| |||||||||||| || || |  ||||||||||||||| || ||||| |||||||||| || || | |||| |||||| || |||||    
T  44634050 tatttgatgagaacttaagggaggttggtatttgttttaaaactagagggggtgtcaatgtcattttagtaaactttaggggaggtgagtgcaattt 44634146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 27573635 - 27573591
Alignment:
Q  181 atttgatgaaaacttaagggagattagtgtaagttttaaaactag 225  Q
    ||||||||| || ||||||||| || |||||||||||||||||||    
T  27573635 atttgatgagaatttaagggaggttggtgtaagttttaaaactag 27573591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 276
Target Start/End: Complemental strand, 35063749 - 35063611
Alignment:
Q  138 atggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcag 237  Q
    ||||||||||||| ||||||||||  ||||||  ||||| ||||||| || |||||||||||||| ||  |||||||||||||||||||| |  ||||||    
T  35063749 atggaaaattaacagtgttaatagataagggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagttttaaaactagagggagtgtcag 35063650  T
Q  238 tgtcattttaatatacctcagggaaggtgaatgtaattt 276  Q
    || |||||||||| |||||| || |||||| ||||||||    
T  35063649 tgacattttaataaacctcaagggaggtgagtgtaattt 35063611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 38356946 - 38356839
Alignment:
Q  171 gtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatg 270  Q
    |||||| | |||||||| |||||||||||||| ||| |||| ||||||||||||||| || |||  ||||||| |||||| ||||||||| |||||| ||    
T  38356946 gtgtttgtatatttgattaaaacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtg 38356847  T
Q  271 taattttc 278  Q
    ||||||||    
T  38356846 taattttc 38356839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 35064389 - 35064475
Alignment:
Q  164 aagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaata 250  Q
    |||||| || |||||||||||||||| || ||||||||  ||||||| |||||||||||||||| |||||| |||||||||||||||    
T  35064389 aagggaggtatttatctatttgatgagaatttaagggaagttagtgtgagttttaaaactagaggggatgttagtgtcattttaata 35064475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 40056429 - 40056315
Alignment:
Q  164 aagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaag 263  Q
    |||||| ||| || ||||||  |||| |||||||||||| ||| |||||||||| ||||||||  || ||| ||||||||||| ||| ||||||| | ||    
T  40056429 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattttcataaacctcagcggag 40056330  T
Q  264 gtgaatgtaattttc 278  Q
    |||| ||||||||||    
T  40056329 gtgagtgtaattttc 40056315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 19601587 - 19601473
Alignment:
Q  171 gtgtttatctatttgatgaaaacttaagggagattagtgtaagtt-------ttaaaactagagaggatgtcagtgtcattttaatatacctcagggaag 263  Q
    |||||| | |||||||| |||||||||||||||||||||||||||       ||||||||||| ||| |||  ||||||| |||||| || |||||||||    
T  19601587 gtgtttgtatatttgataaaaacttaagggagattagtgtaagttttaacttttaaaactagaaagggtgtatgtgtcatattaatagacatcagggaag 19601488  T
Q  264 gtgaatgtaattttc 278  Q
    | || ||||||||||    
T  19601487 gcgagtgtaattttc 19601473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 1300113 - 1299968
Alignment:
Q  131 aaaattgatggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagagg 230  Q
    |||||||||||||| ||||| |||||||||  ||||||| |||||| ||||||| || | ||| | || ||| |||| || |||||| ||||||||  ||    
T  1300113 aaaattgatggaaagttaacggtgttaataaggaagggaggtgtttgtctatttcattagaacattagagaggttagcgttagttttgaaactagaaggg 1300014  T
Q  231 atgtcagtgtcattttaatatacctcagggaaggtgaatgtaattttc 278  Q
     |||  |||||||||||||| || |||  | |||||| ||||||||||    
T  1300013 gtgt--gtgtcattttaataaacttcaaaggaggtgagtgtaattttc 1299968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 29453623 - 29453730
Alignment:
Q  171 gtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatg 270  Q
    |||||| ||||||| |  ||||||||| |||| ||| ||||||||| ||||||||||  | ||| ||||| ||||| ||| ||||| ||| | |||||||    
T  29453623 gtgtttgtctatttcaaaaaaacttaaaggaggttaatgtaagtttcaaaactagaggaggtgttagtgttattttcataaacctcgggggatgtgaatg 29453722  T
Q  271 taattttc 278  Q
    ||||||||    
T  29453723 taattttc 29453730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 1300854 - 1300928
Alignment:
Q  204 ttagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatgtaattttc 278  Q
    |||||||  ||||||||||||||| || | | | ||||||||||||| |||| ||||||||| ||||||||||||    
T  1300854 ttagtgttggttttaaaactagagggggtctaactgtcattttaataaaccttagggaaggtaaatgtaattttc 1300928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 27060408 - 27060338
Alignment:
Q  180 tatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaata 250  Q
    |||||||||| | |||||||||  ||||| | ||||||||||||||||  ||||| ||||||| |||||||    
T  27060408 tatttgatgagagcttaagggatgttagtattagttttaaaactagaggagatgttagtgtcaatttaata 27060338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 45004847 - 45004707
Alignment:
Q  138 atggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcag 237  Q
    ||||||||||||| ||||||||||  ||||||  ||||| ||||||| || |||||||||||||| ||  |||||| |||||||||| || || |||||     
T  45004847 atggaaaattaacagtgttaatagataagggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagatttaaaactaaagggggtgtcat 45004748  T
Q  238 tgtcattttaatatacctcagggaaggtgaatgtaattttc 278  Q
    || |||||||||| ||||||| | |||||| ||||||||||    
T  45004747 tgacattttaataaacctcagaggaggtgagtgtaattttc 45004707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 45005508 - 45005600
Alignment:
Q  178 tctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatg 270  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||||| |   |||| ||||||||||||||| |||||| || |||||||||    
T  45005508 tctatttgatgagaacttaagggagatcagtgtgagttttaaaactagtggaaatgttagtgtcattttaataaacctcaagggaggtgaatg 45005600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 50766097 - 50766026
Alignment:
Q  171 gtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtca 242  Q
    |||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||| || ||| |||||||    
T  50766097 gtgtttgtctaattgatgaaaacttaagggagattagtgtaggttttcaaactagagggggtgttagtgtca 50766026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 50824067 - 50823969
Alignment:
Q  178 tctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatgtaattt 276  Q
    |||| ||||||||||||||| |||| |||||||| ||||| |||||||||||| ||| ||||||||||  ||| | |||| || ||||| |||||||||    
T  50824067 tctaattgatgaaaacttaaaggaggttagtgtaggttttcaaactagagagggtgttagtgtcatttagataaaactcaagggaggtggatgtaattt 50823969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 276
Target Start/End: Original strand, 50851793 - 50851891
Alignment:
Q  178 tctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatgtaattt 276  Q
    |||| ||||||||||||||| |||| |||||||| ||||| |||||||||||| ||| ||||||||||  ||| | |||| || ||||| |||||||||    
T  50851793 tctaattgatgaaaacttaaaggaggttagtgtaggttttcaaactagagagggtgttagtgtcatttagataaaactcaagggaggtggatgtaattt 50851891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 45145969 - 45145856
Alignment:
Q  164 aagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaag 263  Q
    |||||| |||||| | ||||||||  ||||||||||||  ||||||| |||||||||||||||| || | | | | ||||||||||| || | |||| ||    
T  45145969 aagggaggtgtttgtttatttgatagaaacttaagggatgttagtgttagttttaaaactagag-gggtctaactatcattttaataaactttaggggag 45145871  T
Q  264 gtgaatgtaattttc 278  Q
    |||||||||||||||    
T  45145870 gtgaatgtaattttc 45145856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 45146663 - 45146755
Alignment:
Q  164 aagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctc 256  Q
    |||||| |||||| ||||||| || | ||| |||||||| ||||||| |||||||||| ||||  ||||||  |||||||||||||| |||||    
T  45146663 aagggaggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaacctc 45146755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 51489821 - 51489934
Alignment:
Q  163 gaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaa 262  Q
    ||||||| |||||| |||||||| | ||||| |||||||| ||| | |   |||||||||||||| || ||| |||| |||||||||| |||| |||| |    
T  51489821 gaagggaggtgtttgtctatttgttaaaaacataagggaggttaatattcattttaaaactagagggggtgttagtgccattttaataaaccttagggga 51489920  T
Q  263 ggtgaatgtaattt 276  Q
    ||||| || |||||    
T  51489921 ggtgagtgcaattt 51489934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 278
Target Start/End: Original strand, 50071965 - 50072112
Alignment:
Q  131 aaaattgatggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagagg 230  Q
    |||||| | |||||||||||  ||||||||  |||||||  ||||| | |||||||||| |||||||||||| || |||||||||||||||||| || ||    
T  50071965 aaaattaacggaaaattaacattgttaatatggaagggagatgtttgtatatttgatgagaacttaagggaggtttgtgtaagttttaaaactaaagggg 50072064  T
Q  231 atgtcagtgtcattttaatatacctcagggaaggtgaatgtaattttc 278  Q
     ||| |||||||||| ||  || ||||||| ||||||  |||||||||    
T  50072065 gtgttagtgtcatttcaacgtaactcaggggaggtgagagtaattttc 50072112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 249
Target Start/End: Complemental strand, 50071383 - 50071275
Alignment:
Q  141 gaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgt 240  Q
    ||||| |||| |||||||||   ||||||||||||| | |||||||||||| |||||||||| ||||||| | |||||||||||||  |||||| |||      
T  50071383 gaaaactaacggtgttaataagtaagggaagtgtttgtgtatttgatgaaagcttaagggaggttagtgttaattttaaaactagaagggatgttagtaa 50071284  T
Q  241 cattttaat 249  Q
    |||||||||    
T  50071283 cattttaat 50071275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 12007570 - 12007487
Alignment:
Q  164 aagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcatttta 247  Q
    |||||| |||||| | |||||||||| |||||||| ||| ||| |||| ||||||||||||||| || ||||||||||||||||    
T  12007570 aagggaggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgtcagtgtcatttta 12007487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 39631362 - 39631447
Alignment:
Q  164 aagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaat 249  Q
    ||||||| |||| | |||||| |  |||||||||||||||||| |||||||||||||| ||||| |||||||| | ||||||||||    
T  39631362 aagggaaatgttaacctattttagcaaaacttaagggagattattgtaagttttaaaaatagaggggatgtcaatatcattttaat 39631447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 12007919 - 12008003
Alignment:
Q  194 ttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatgtaattttc 278  Q
    ||||||||| |||||||||||||||||| ||||| || |||||||||||||||| || | || |||| |||||  ||||||||||    
T  12007919 ttaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaatcttaggggaggtgtgtgtaattttc 12008003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 26305643 - 26305563
Alignment:
Q  171 gtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatat 251  Q
    |||||| || ||||||| |||| ||| ||||||||| |||||||||||||| |||||  | |||| |||||||||||||||    
T  26305643 gtgtttgtccatttgataaaaatttatgggagattaatgtaagttttaaaattagaggaggtgtcggtgtcattttaatat 26305563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 2486923 - 2487038
Alignment:
Q  164 aagggaagtgtttatctatttgatgaaaacttaa-gggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaa 262  Q
    |||||| |||||| | | |||||||| | ||||| |||| |||||||| |||||||||||||||  || |||||||||| |||||||| |||| || | |    
T  2486923 aagggaggtgtttgtatttttgatgagagcttaaagggacattagtgttagttttaaaactagaaggggtgtcagtgtcgttttaatagaccttagtgga 2487022  T
Q  263 ggtgaatgtaattttc 278  Q
    ||| | ||||||||||    
T  2487023 ggtcattgtaattttc 2487038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 5473233 - 5473139
Alignment:
Q  152 gtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcatttta 247  Q
    |||||||||| ||||||||| |||| | |||||||  | || ||||||||| || |||||||||||||||||| ||||| ||||| ||| ||||||    
T  5473233 gtgttaatagagaagggaagagtttgtgtatttgacaataatttaagggagttt-gtgtaagttttaaaactaaagagggtgtcattgttatttta 5473139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 39484478 - 39484363
Alignment:
Q  131 aaaattgatggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagagg 230  Q
    |||||| | |||||| |||| |||||||||   |||||| |||||||| ||||| |||| ||||| |||||| | |||||||||||||||| ||| | ||    
T  39484478 aaaattaacggaaaagtaacggtgttaataaataagggatgtgtttatatatttcatgagaacttgagggaggtaagtgtaagttttaaaattagtgggg 39484379  T
Q  231 atgtcagtgtcatttt 246  Q
    || |  ||||||||||    
T  39484378 atattggtgtcatttt 39484363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 5474862 - 5474932
Alignment:
Q  191 aacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcaggga 261  Q
    |||||||||||| || |||||||||||||||  |||| || ||| ||||||||||| | |||||| |||||    
T  5474862 aacttaagggaggttggtgtaagttttaaaataagaggggttgttagtgtcattttgacataccttaggga 5474932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 32641269 - 32641203
Alignment:
Q  179 ctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattt 245  Q
    |||||| |||| |||||||||||  ||||||||| |||||||| |||||  | ||||||||||||||    
T  32641269 ctattttatgagaacttaagggatgttagtgtaatttttaaaattagaggaggtgtcagtgtcattt 32641203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 26439959 - 26439911
Alignment:
Q  171 gtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaa 219  Q
    |||||| | |||||||||| || ||||||||||||| ||||||||||||    
T  26439959 gtgtttgtgtatttgatgagaatttaagggagattattgtaagttttaa 26439911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 24153308 - 24153194
Alignment:
Q  164 aagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaag 263  Q
    |||||| |||||| || |||| || | |||||||||||| ||||||| | |||||||||||||| || |||| || ||||||||||| |||||| |||||    
T  24153308 aagggaggtgtttgtccatttcattagaacttaagggaggttagtgttacttttaaaactagagtgggtgtctgtctcattttaatagacctcaaggaag 24153209  T
Q  264 gtgaatgtaattttc 278  Q
    |||| ||||||||||    
T  24153208 gtgagtgtaattttc 24153194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 17115849 - 17115702
Alignment:
Q  131 aaaattgatggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagagg 230  Q
    |||||| | |||||||||||  ||||||||  |||||||  ||||| | |||||||||| |||||||||||| || |||||||||||||||||||||  |    
T  17115849 aaaattaacggaaaattaacattgttaatatggaagggagatgtttgtatatttgatgagaacttaagggaggttggtgtaagttttaaaactagagttg 17115750  T
Q  231 atgtcagtgtcattttaatatacctcagggaaggtgaatgtaattttc 278  Q
     ||| |||||||||| ||  || ||||| | ||||||  |||||||||    
T  17115749 gtgttagtgtcatttcaacgtaactcagaggaggtgagagtaattttc 17115702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 278
Target Start/End: Original strand, 24153914 - 24154057
Alignment:
Q  135 ttgatggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgt 234  Q
    |||||||| || |||  |||||||||   |||||| |||||| | ||||||||  ||||||||||||| ||| ||| |||||||||||||||| || | |    
T  24153914 ttgatggagaactaatggtgttaatataaaagggaggtgtttgtttatttgatagaaacttaagggaggttaatgttagttttaaaactagagggggtct 24154013  T
Q  235 cagtgtcattttaatatacctcagggaaggtgaatgtaattttc 278  Q
     | ||||||||||||| |||| |||| |||||| |||| |||||    
T  24154014 aactgtcattttaataaaccttaggggaggtgagtgtagttttc 24154057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 35145714 - 35145618
Alignment:
Q  131 aaaattgatggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagag 227  Q
    |||||| | |||||| |||||||||||| |   |||||| |||||| ||||||| |||| ||||  |||||| ||||||||||||||||||||||||    
T  35145714 aaaattaacggaaaagtaactgtgttaacaagtaagggatgtgtttgtctattttatgagaactcgagggaggttagtgtaagttttaaaactagag 35145618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 31079702 - 31079821
Alignment:
Q  146 ttaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattt 245  Q
    ||||| ||||||||   ||||||| |||||| |||||||| ||||||| |||||||| ||| |||   ||||||||||||||| | ||| |||| |||||    
T  31079702 ttaacggtgttaatcaagaagggatgtgtttgtctatttgctgaaaacctaagggaggttaatgttcattttaaaactagagaaggtgttagtgccattt 31079801  T
Q  246 taatatacctcagggaaggt 265  Q
    ||||| |||| |||| ||||    
T  31079802 taataaaccttaggggaggt 31079821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 17116465 - 17116544
Alignment:
Q  171 gtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaata 250  Q
    |||||| | |||||||||||| ||||| |||| ||||||| |||||||||||||||  |||||| |||  ||||||||||    
T  17116465 gtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagaagggatgttagtaacattttaata 17116544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 40816322 - 40816207
Alignment:
Q  163 gaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaa 262  Q
    |||||| | ||||| |||||| |||||||||||||||||| ||| |||   |||||||||||||| ||| ||||   ||||||||||| | || |||| |    
T  40816322 gaagggtaatgtttgtctattagatgaaaacttaagggaggttaatgtttattttaaaactagaggggaagtcacactcattttaatagaacttagggga 40816223  T
Q  263 ggtgaatgtaattttc 278  Q
    ||||| || |||||||    
T  40816222 ggtgagtgcaattttc 40816207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 34597623 - 34597727
Alignment:
Q  174 tttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatgtaa 273  Q
    ||||| ||||||||||||||||| |||||  ||||||   |||||||| ||||| ||||||  |||| |||| |  | ||||||||| |||| |||||||    
T  34597623 tttatttatttgatgaaaacttaggggaggctagtgtttattttaaaattagaggggatgtttgtgttatttaaggagacctcaggggaggtcaatgtaa 34597722  T
Q  274 ttttc 278  Q
    |||||    
T  34597723 ttttc 34597727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 29108704 - 29108762
Alignment:
Q  166 gggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaacta 224  Q
    |||| |||||| | |||||| | |||||| ||||||| |||||||||||||||||||||    
T  29108704 gggaggtgtttgtatatttgttaaaaactcaagggaggttagtgtaagttttaaaacta 29108762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 9164755 - 9164858
Alignment:
Q  163 gaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaa 262  Q
    ||||||| |||||| ||| |||| |||||| ||||||||| ||| |||   |||||||||||||| || ||| |||| |||||||||| | || |||| |    
T  9164755 gaagggaggtgtttgtctctttgttgaaaatttaagggaggttaatgtccattttaaaactagag-ggctgtgagtgccattttaataaatcttagggga 9164853  T
Q  263 ggtga 267  Q
    |||||    
T  9164854 ggtga 9164858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 13475962 - 13476063
Alignment:
Q  17 ctggaaatttcaaaatcgtttgcaaaagtctaaagaaacaacaaagaagaaggtttgtattttcccaattcaagaatccccttaaaagttaactgaaaat 116  Q
    |||||| |||||||||||| |||| | || ||||||| ||||||| ||||||||||||  ||| |||||| ||||||||| |||||||||||| ||||||    
T  13475962 ctggaattttcaaaatcgtctgcataggtataaagaatcaacaaaaaagaaggtttgtcgtttgccaattgaagaatcccgttaaaagttaacagaaaat 13476061  T
Q  117 tt 118  Q
    ||    
T  13476062 tt 13476063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 276
Target Start/End: Original strand, 19109572 - 19109681
Alignment:
Q  167 ggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtg 266  Q
    ||||||||| |||||||| || |||||||||||||| ||| |||||||||||||| ||||| |||||||| ||| ||||| ||| ||||  ||| |||||    
T  19109572 ggaagtgttaatctattttataaaaacttaagggaggttattgtaagttttaaaaatagaggggatgtcaatgttattttgatagaccttgggggaggtg 19109671  T
Q  267 aatgtaattt 276  Q
    | ||||||||    
T  19109672 actgtaattt 19109681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 26670768 - 26670623
Alignment:
Q  131 aaaattgatggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagagg 230  Q
    ||||||||| |||| ||||| |||||||||  ||||||| |||||| ||||||| || | ||| | |||||| |||  || |||||| ||||||||  ||    
T  26670768 aaaattgattgaaagttaacggtgttaataaagaagggaggtgtttgtctatttcattagaacattagggaggttaccgttagttttgaaactagaaggg 26670669  T
Q  231 atgtcagtgtcattttaatatacctcagggaaggtgaatgtaattttc 278  Q
     |||  |||||||||||||| |||||| || |||||| ||||||||||    
T  26670668 gtgt--gtgtcattttaataaacctcaagggaggtgagtgtaattttc 26670623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 12029440 - 12029353
Alignment:
Q  163 gaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaata 250  Q
    ||||||| |||| |||||||||| |||||||||||||||  ||| |||   |||| |||||||||||| ||| |||||||||||||||    
T  12029440 gaagggatgtgtatatctatttgttgaaaacttaagggatgttaatgttcattttgaaactagagagggtgttagtgtcattttaata 12029353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 30921571 - 30921658
Alignment:
Q  163 gaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaata 250  Q
    ||||||| |||||  ||||| |||| | |||||||||||| ||| |||| ||||||||||||||| |||| | |||||||||||||||    
T  30921571 gaagggaggtgttagtctatatgattagaacttaagggagtttattgtatgttttaaaactagaggggattttagtgtcattttaata 30921658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 26674037 - 26674111
Alignment:
Q  204 ttagtgtaagttttaaaactagagaggatgtcagtgtcattttaatatacctcagggaaggtgaatgtaattttc 278  Q
    |||||||  ||||||||||||||| || | | | ||||||||||||| |||| ||||||||| ||||||||||||    
T  26674037 ttagtgttggttttaaaactagagggggtctaactgtcattttaataaaccttagggaaggtaaatgtaattttc 26674111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 14020136 - 14020030
Alignment:
Q  18 tggaaatttcaaaatcgtttgcaaaagtctaaagaaacaacaaagaagaaggtttgtattttcccaattcaagaatccccttaaaagttaactgaaaatt 117  Q
    ||||| |||||||||||| | || |||| || |||| | ||||| || | ||||||| |||| |||||| ||||||| | ||||||||||||  ||||||    
T  14020136 tggaattttcaaaatcgtctccataagtgtagagaatcgacaaaaaaaatggtttgtcttttgccaattgaagaatctcgttaaaagttaacaaaaaatt 14020037  T
Q  118 tccttaa 124  Q
    | |||||    
T  14020036 ttcttaa 14020030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 278
Target Start/End: Original strand, 26 - 171
Alignment:
Q  131 aaaattgatggaaaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagagg 230  Q
    ||||||||| |||| ||||| |||||||||  ||||||| |||||| ||||||| || | ||| | |||||| |||  || |||||| ||||||||  ||    
T  26 aaaattgattgaaagttaacggtgttaataaagaagggaggtgtttgtctatttcattagaacattagggaggttaccgttagttttgaaactagaaggg 125  T
Q  231 atgtcagtgtcattttaatatacctcagggaaggtgaatgtaattttc 278  Q
     |||  |||||||||||||| |||||| || |||||| ||||||||||    
T  126 gtgt--gtgtcattttaataaacctcaagggaggtgagtgtaattttc 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 6470 - 6552
Alignment:
Q  168 gaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcattttaata 250  Q
    |||||||||  ||||||||| | ||||||||||   |||||||||||||||||||||||||  |||||| ||| |||||||||    
T  6470 gaagtgtttgcctatttgataataacttaaggggtgttagtgtaagttttaaaactagagataatgtcaatgttattttaata 6552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 7926 - 7855
Alignment:
Q  152 gtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggagattagtgtaagttttaaaact 223  Q
    ||||||||||  |||| | |||||| | |||||||||| |||||||| |||||||||||| |||||||||||    
T  7926 gtgttaatagaaaaggaaggtgtttgtgtatttgatgagaacttaagagagattagtgtaggttttaaaact 7855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 4833190 - 4833237
Alignment:
Q  180 tatttgatgaaaacttaagggagattagtgtaagttttaaaactagag 227  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  4833190 tatttgattaaaacttaaggaaggttagtgtaagttttaaaactagag 4833237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 21516265 - 21516216
Alignment:
Q  178 tctatttgatgaaaacttaagggagattagtgtaagttttaaaactagag 227  Q
    |||||||||| | |||||||||||||||||||||  ||||||||||||||    
T  21516265 tctatttgataagaacttaagggagattagtgtatattttaaaactagag 21516216  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 21516488 - 21516439
Alignment:
Q  178 tctatttgatgaaaacttaagggagattagtgtaagttttaaaactagag 227  Q
    |||||||||| | |||||||||||||||||||||  ||||||||||||||    
T  21516488 tctatttgataagaacttaagggagattagtgtatattttaaaactagag 21516439  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 21516711 - 21516662
Alignment:
Q  178 tctatttgatgaaaacttaagggagattagtgtaagttttaaaactagag 227  Q
    |||||||||| | |||||||||||||||||||||  ||||||||||||||    
T  21516711 tctatttgataagaacttaagggagattagtgtatattttaaaactagag 21516662  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 17738996 - 17739055
Alignment:
Q  143 aaattaactgtgttaatagtgaagggaagtgtttatctatttgatgaaaacttaagggag 202  Q
    |||| ||| |||||||||| |||||| ||| | ||| |||||||||||||||||||||||    
T  17738996 aaataaacagtgttaatagagaagggtagtttctatttatttgatgaaaacttaagggag 17739055  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 35263804 - 35263746
Alignment:
Q  188 gaaaacttaagggagattagtgtaagttttaaaactagagaggatgtcagtgtcatttt 246  Q
    ||||||||||||||| ||| ||||||||| |||| |||| ||||||| | |||||||||    
T  35263804 gaaaacttaagggaggttaatgtaagtttcaaaattagaaaggatgttaatgtcatttt 35263746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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