View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7359_high_6 (Length: 614)
Name: NF7359_high_6
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7359_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 35449799 - 35449459
Alignment:
| Q |
1 |
caccgttttcactagattgtgtttttcatcggtatcaagtccnnnnnnnnn-cacaagtataataatttctgaactgaatttcattaaaattctctttat |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449799 |
caccgttttcactagattgtgtttttcatcggtatcaagtccttttttttttcacaagtataataatttctgaactgaatttcattaaaattctctttat |
35449700 |
T |
|
| Q |
100 |
ttatctttgtttcttatgtgccacggtgcgcctaccataaaagagatatgatgacttttttcttcttgtatttgttttaatttctatcattctgaaaatt |
199 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35449699 |
ttatctctggttcttatgtgccacggtgcgcctaccataaaagag-tatgatgacttttttctgcttgtattcgttttaatttctatcattctgaaaatt |
35449601 |
T |
|
| Q |
200 |
taaaatacatactcaatattctagagacatgataaaaagatgtagtagttaacgagatacacaaatgaaatgagggaagttacaatcgcaatcttcatta |
299 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
35449600 |
taaaatacatactcaatattctatagacatgataaaaagatgtagtagttaacaagatacacaaatgaaatgagtgaagttacaatcgcaatctttatta |
35449501 |
T |
|
| Q |
300 |
ttctaaacttgatattgaaagctcaattgcaatctattttgt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449500 |
ttctaaacttgatattgaaagctcaattgcaatctattttgt |
35449459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 362 - 594
Target Start/End: Complemental strand, 35449465 - 35449233
Alignment:
| Q |
362 |
attttgttttacagcaactgagaatccagcatgctattatgtgtctgtgcaacctgctgaaggtctgaacccaaaaaatatgcaacatgggtgggaatcc |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449465 |
attttgttttacagcaactgagaatccagcatgctattatgtgtctgtgcaacctgctgaaggtctgaacccaaaaaatatgcaacatgggtgggaatcc |
35449366 |
T |
|
| Q |
462 |
aatttatcttatgagttgaataatggtggatcattgtttggtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacga |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35449365 |
aatttatcttatgagttgaataatggtggatcatcgtttggtatggttgacgtgtctgctcaaggagattgttcaaccatgcattatagtcagaacacga |
35449266 |
T |
|
| Q |
562 |
acatgggctttcaacaaggaattaatgagggaa |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35449265 |
acatgggctttcaacaaggaattaatgagggaa |
35449233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 502 - 588
Target Start/End: Complemental strand, 35449094 - 35449008
Alignment:
| Q |
502 |
gtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacgaacatgggctttcaacaaggaattaatg |
588 |
Q |
| |
|
|||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
35449094 |
gtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatg |
35449008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 35441377 - 35441307
Alignment:
| Q |
175 |
tttaatttctatcattctgaaaatttaaaatacatactcaatattctagagacatgataaaaagatgtagt |
245 |
Q |
| |
|
||||| || ||||||||| |||||| |||||||||| | | ||||| | |||||||||||||||||||||| |
|
|
| T |
35441377 |
tttaacttgtatcattctaaaaattcaaaatacatagttactattccaaagacatgataaaaagatgtagt |
35441307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 594
Target Start/End: Complemental strand, 35441206 - 35440982
Alignment:
| Q |
370 |
ttacagcaactgagaatccagcatgctattatgtgtctgtgcaacctgctgaaggtctgaacccaaaaaatatgcaacatgggtgggaatccaatttatc |
469 |
Q |
| |
|
|||||| | ||||||||||||||| | | |||| ||||||||| || | ||||| ||||| |||||||| |||||||||| || ||||||||| || |
|
|
| T |
35441206 |
ttacagtacctgagaatccagcatattctcatgtttctgtgcaaactccagaaggcttgaactcaaaaaatctgcaacatggtgtggtatccaatttttc |
35441107 |
T |
|
| Q |
470 |
ttatgagttgaataatggtggatcattgtttggtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacgaacatgggc |
569 |
Q |
| |
|
| || ||| ||||| ||||||| |||||||||||||| ||||||||| |||||| | ||| |||| || || ||||||| | |||||||| |
|
|
| T |
35441106 |
tgatctgtttaataacaaaggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgggt |
35441007 |
T |
|
| Q |
570 |
tttcaacaaggaattaatgagggaa |
594 |
Q |
| |
|
| ||||||||| |||||| ||||| |
|
|
| T |
35441006 |
atgcaacaaggagttaatgggggaa |
35440982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 588
Target Start/End: Complemental strand, 35448886 - 35448780
Alignment:
| Q |
482 |
taatggtggatcattgtttggtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacgaacatgggctttcaacaagga |
581 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||||| |||||| || || ||||||| ||||||||||| | ||||||| || || |||||| |
|
|
| T |
35448886 |
taatggtggatcatcatttcatatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaagga |
35448787 |
T |
|
| Q |
582 |
attaatg |
588 |
Q |
| |
|
|||||| |
|
|
| T |
35448786 |
gttaatg |
35448780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 1865115 - 1865175
Alignment:
| Q |
296 |
attattctaaacttgatattgaaagctcaattgcaatctattttgtattccagctctaaat |
356 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
1865115 |
attattctaagtatgatattcaaagttcaattgtaatctattttgttttccggctctaaat |
1865175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University