View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7359_low_1 (Length: 812)
Name: NF7359_low_1
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7359_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 689; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 15 - 795
Target Start/End: Original strand, 10308212 - 10308994
Alignment:
| Q |
15 |
ggacatcatttgctgcaagactaccaatattttagttttccatttaaaaaagttaaaatattaatcaaaacagcccaatatcatcggataaatctggatt |
114 |
Q |
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| T |
10308212 |
ggacatcatttgctgcaagactaccaatattttagttttccatttaaaaaagttaaaatattaatcaaaacaacccaatatcatcggataaatctggatt |
10308311 |
T |
|
| Q |
115 |
cacctgcaaaaataattcactatctttgtgataagaaaagagggtatcccgattgacatagtatagatcgcactcactacatggaggtaacctgatttca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10308312 |
cacctgcaaaaataattcactatctttgtgataagaaaagagggtatcccgattgacatagtatagatcgcactcactacatggaggtaacctgatttca |
10308411 |
T |
|
| Q |
215 |
tgacaaaatatcagtagatggagataaagaaatagtctcatgttccaagtaaatatgaaataagttagaaataacctgctaagattagggatggcatttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10308412 |
tgacaaaatatcagtagatggagataaagaaatagtctcatgttccaagtaaatatgaaataagttagaaataacctgctaagattagggatggcatttg |
10308511 |
T |
|
| Q |
315 |
aaacatctaagcaaagtagtgtattaagccagctttcaatgggatccccagaagcatatctgatggattcactcagttcaattttcttaaaacctgaaag |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10308512 |
aaacatctaagcaaagtagtgtattaagccagctttcaacgggatccccagaagcatatctgatggattcactcagttcaattttcttaaaacctgaaag |
10308611 |
T |
|
| Q |
415 |
at--nnnnnnnnnttaacaataacacatagcccttaaaaagcttatatactaaaatcgtttaatggactatggattgttgaaaaacaaaatatcacaatt |
512 |
Q |
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|| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10308612 |
ataaaataaaaaattaacaataacacacagcccttaaaaagcttatatattaaaatcgtttaatggactatggattgttgaaaaacaaaatatcacaatt |
10308711 |
T |
|
| Q |
513 |
tctctagttggtatagaatgtatttcctttctgaacagtacatgacatgcatgttgtttattttgaacgacttttacatatacagaagcaaattagtacc |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10308712 |
tctctagttggtatagaatgtatttcctttctgaacagtacatgacatgcatgttgtttattttgaacgacttttacatatacagaagcaaattagtacc |
10308811 |
T |
|
| Q |
613 |
agaatcgatgccctctgttgccttggcagaatcattgctttgaccttccagttgatgcaaaagttttaatgataaagagcgtccagtaccttcataactg |
712 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10308812 |
agaatcagtgccctctgttgccttggcagaatcgttgctttgaccttccagttgatgcaaaagttttaatgataaagagcgtccagtaccttcataactg |
10308911 |
T |
|
| Q |
713 |
tccagtgtnnnnnnnncagagttcttaccgtcaatcagtaatgtcgatgttaactcttttaaatggggagatatatggaatgt |
795 |
Q |
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| T |
10308912 |
tccagtgtaaaaaaaacagagttcttaccatcaatcagtaatgtcgatgttaactcttttaaatggggagatatatggaatgt |
10308994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 6e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 116 - 405
Target Start/End: Original strand, 38430949 - 38431239
Alignment:
| Q |
116 |
acctgcaaaaataattcactatctttgtgataagaaaagagggtatcccgattgacatagtatagatcgcactcactacatggaggtaacctgatttcat |
215 |
Q |
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||||||||||||||||||||||| ||||| || ||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
38430949 |
acctgcaaaaataattcactatccttgtggtaggaaaatagagtatcccgattgacatagtatagatcacactcacttgctggaggtaacctgatttcag |
38431048 |
T |
|
| Q |
216 |
gacaaaatatcagtagatggagataaagaaatagtctcatgttccaagtaaatatgaaataag-ttagaaataacctgctaagattagggatggcatttg |
314 |
Q |
| |
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| || | | | ||| |||| ||| | | || ||||||| |||||| || |||||||| || || | |||||||||||| ||||||||||||||||| |
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| T |
38431049 |
aataacacaaccgtaaatggggattgaaatatggtctcatattccaaagaagtatgaaatgagctttggtataacctgctaatattagggatggcatttg |
38431148 |
T |
|
| Q |
315 |
aaacatctaagcaaagtagtgtattaagccagctttcaatgggatccccagaagcatatctgatggattcactcagttcaattttcttaaa |
405 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
38431149 |
aaacatctaagcaaagtaatgtgttaagccagctttcaataggatccccaggagcatatctgatggattcactcagttctattttcttaaa |
38431239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 610 - 710
Target Start/End: Complemental strand, 11191960 - 11191860
Alignment:
| Q |
610 |
accagaatcgatgccctctgttgccttggcagaatcattgctttgaccttccagttgatgcaaaagttttaatgataaagagcgtccagtaccttcataa |
709 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11191960 |
accagaatcagtgccctctgttgtcttggcagaatcattgctttgaccttccaattgatgcaaaagttttaatgataaagagcgtccaataccttcataa |
11191861 |
T |
|
| Q |
710 |
c |
710 |
Q |
| |
|
| |
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| T |
11191860 |
c |
11191860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 11192115 - 11192033
Alignment:
| Q |
122 |
aaaaataattcactatctttgtgataagaaaagagggtatcccgattgacatagtatagatcgcactcactacatggaggtaa |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11192115 |
aaaaataattcactatctttgtgataagaaaatagggtatcccgattgacatagtatagatcacactcactacatggaggtaa |
11192033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 350 - 408
Target Start/End: Complemental strand, 11192016 - 11191958
Alignment:
| Q |
350 |
tcaatgggatccccagaagcatatctgatggattcactcagttcaattttcttaaaacc |
408 |
Q |
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|||||| ||||||||||||||||||| ||||||| | |||||| ||||||||||||||| |
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| T |
11192016 |
tcaatgtgatccccagaagcatatcttatggattgattcagttgaattttcttaaaacc |
11191958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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