View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7359_low_13 (Length: 393)
Name: NF7359_low_13
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7359_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 51488718 - 51488349
Alignment:
| Q |
19 |
gttgattccattgtctctcataagtttcaccattatttgagctggaagaggatgcgatgtaatcgttccccaattgcaagcaaagccaagggtacctttt |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51488718 |
gttgattccattgtctctcataagcttcaccattatttgagctggaagaggatgcgatgtaatcgttccccaattgcaagcaaagccaagggtacctttt |
51488619 |
T |
|
| Q |
119 |
gccaaactttggcttagtatacaaagtgccaacaaaaagcacgtactaaaacgttggaatcccatattgtcnnnnnnncttccttgac-ttgcctctatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
51488618 |
gccaaactttggcttagtatacaaagtgccaacaaaaagcacgtactaaaacgttggaatcccatattgtctttttttcttccttgactttgcctctatt |
51488519 |
T |
|
| Q |
218 |
tttaagttctatctttcccaacatgcacctatgtatatgaagg-gacgattctcgaataaaaaaggtgggggaaaaaattaatgtccnnnnnnncagtag |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
51488518 |
tttaagttctatctttcccaacatgcacctatgtatatgaaggtgacgattctcgaataaaaaaggtgggggaaaaaagtaatgtcctttttttcagtag |
51488419 |
T |
|
| Q |
317 |
aaagttacgtaaagaattgcatgaaaactcaaccaagcacttgattccaaaacccacttgataacaccaa |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51488418 |
aaagttacgtaaagaattgcatgaaaactcaaccaagcacttgattccaaaacccacttgataacaccaa |
51488349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University