View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7359_low_20 (Length: 271)
Name: NF7359_low_20
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7359_low_20 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 80 - 271
Target Start/End: Original strand, 40614659 - 40614850
Alignment:
| Q |
80 |
tgataagcagcaaagcaatagcatccatcctctccaagaaagcacgcttggctttgggtctcggcgccgctgcaactactgtgtactcctctgtccttgt |
179 |
Q |
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| T |
40614659 |
tgataagcagcaaagcaatagcatccatcgtctccaagaaagctcgcttggctttgggtctcggcgccgctgcaactactgtgtactcctctgtccttgt |
40614758 |
T |
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| Q |
180 |
cgaccaattccacgacactcttccagaatctgttggtgaaggaactcatttcctgatcccatgggttcaaaagccctacatcttggatgtcc |
271 |
Q |
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| T |
40614759 |
cgaccaattccacggcactcttccagaatctgttggtgaaggaactcatttcctgatcccatgggttcaaaagccctacatcttggatgtcc |
40614850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 40610817 - 40610908
Alignment:
| Q |
172 |
gtccttgtcgaccaattccacgacactcttccagaatctgttggtgaaggaactcatttcctgatcccatgggttcaaaagccctacatctt |
263 |
Q |
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| T |
40610817 |
gtcctcgtcgaccgattccacggcactcttcccagatccgtcggcaaaggaattcatttcaagatcccatgggttcaaaagccctacatctt |
40610908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 40610698 - 40610743
Alignment:
| Q |
83 |
taagcagcaaagcaatagcatccatcctctccaagaaagcacgctt |
128 |
Q |
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| T |
40610698 |
taagcagccaagcaaaagcatccaacctcttcaagaaagcacgctt |
40610743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 1385228 - 1385170
Alignment:
| Q |
205 |
gaatctgttggtgaaggaactcatttcctgatcccatgggttcaaaagccctacatctt |
263 |
Q |
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| T |
1385228 |
gaatcagtcggtgaaggaactcatttcctcatcccatgggttcaaaagccttacgtctt |
1385170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 18133264 - 18133313
Alignment:
| Q |
214 |
ggtgaaggaactcatttcctgatcccatgggttcaaaagccctacatctt |
263 |
Q |
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| T |
18133264 |
ggtgaaggaacccatttcctcatcccatgggttcaaaagccttacatctt |
18133313 |
T |
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