View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7359_low_25 (Length: 240)
Name: NF7359_low_25
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7359_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 23748274 - 23748070
Alignment:
| Q |
15 |
aatatcggatacaggaattgaagcaataaccagttgttgtcctcagctaaaaacattttccgtctactggaacgtgaggtactttgaaaaatttcttaat |
114 |
Q |
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| T |
23748274 |
aatatcggatacaggaattgaagcaataactagttgttgtcctcagctaaaaacattttccgtctactggaacgtgaggtactttgaaaa--ttcttaat |
23748177 |
T |
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| Q |
115 |
gtgccatgtttgatttagcatttgaaaatcttactttggatttacaagtcaacccttagtaacaatactgaaatatgactcttatttcagggtaactgat |
214 |
Q |
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| T |
23748176 |
gacccgtgtttgatttagcatttgaaaatctcactttggatttaaaagtcaatccttagcaacaatactg-aatatgactcttatttcagggtaactgat |
23748078 |
T |
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| Q |
215 |
actggact |
222 |
Q |
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|||||||| |
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| T |
23748077 |
actggact |
23748070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 23687333 - 23687147
Alignment:
| Q |
29 |
gaattgaagcaataaccagttgttgtcctcagctaaaaacattttccgtctactggaacgtgaggtactttgaaaaatttcttaatgtgccatgtttgat |
128 |
Q |
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||||||||||||||||||||||||||||||||||| |||| | |||| |||||||||| ||||||| | || || ||||| ||||||| ||||||||| |
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| T |
23687333 |
gaattgaagcaataaccagttgttgtcctcagctagaaacctgttccatctactggaatgtgaggtgcattcaattttttctaaatgtgcaatgtttgat |
23687234 |
T |
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| Q |
129 |
ttagcatttgaaaatcttactttggatttacaagtcaacccttagtaacaatactgaaatatgactcttatttcagggtaactgata |
215 |
Q |
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| T |
23687233 |
tttgcagttgaaaacctcactttggatttaaaagttaatccttagcaacaatactgaaatatgagtcctattacaggataactgata |
23687147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 23743232 - 23743287
Alignment:
| Q |
31 |
attgaagcaataaccagttgttgtcctcagctaaaaacattttccgtctactggaa |
86 |
Q |
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|||||||||||||||||||||||| |||||||| |||| |||||| |||||||||| |
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| T |
23743232 |
attgaagcaataaccagttgttgttctcagctataaaccttttccatctactggaa |
23743287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 23721392 - 23721338
Alignment:
| Q |
29 |
gaattgaagcaataaccagttgttgtcctcagcta-aaaacattttccgtctact |
82 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||| |||||| |||||| |
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| T |
23721392 |
gaattgaagcaataaccaattgttgtcctcagctagaaaactttttccatctact |
23721338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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