View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7359_low_26 (Length: 212)
Name: NF7359_low_26
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7359_low_26 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 6333839 - 6333656
Alignment:
| Q |
11 |
gaagaatatgttgtatcaatcaaaatttgagtttcaagaacaatggcagaaatagaagctacaattgcaaatgcaacttcaacttcaacttcatcagctt |
110 |
Q |
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| T |
6333839 |
gaagaatgtgttgtactcatcaaaagtttagtttgaagaacaatggctgaattaggagctacaattacaattccaaatgcaacttcaacttcatcagctt |
6333740 |
T |
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| Q |
111 |
caacaaggtaaataacttcaattttcagctgagtaactactaaaacattaaccttctctgtttcccttgatttttagtagaact |
194 |
Q |
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| T |
6333739 |
caacaaggtaaataacttcaattttcagctgagtaactactaaaacattaaccttctctgtttcccttgatttttagtagaact |
6333656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 6326331 - 6326182
Alignment:
| Q |
39 |
gagtttcaagaacaatggcagaaatagaagctacaattgcaaatgcaacttcaacttcaacttcatcagcttcaacaaggtaaataacttcaattttcag |
138 |
Q |
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| T |
6326331 |
gagtttaacgaacaatggctgaattagaagctacaattgcaaatgcaacttcaacttcaacttcatcagcttcaacaaggtaaataacttcaattttc-- |
6326234 |
T |
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| Q |
139 |
ctgagtaactactaaaacattaaccttctctgtttcccttgatttttagtagaac |
193 |
Q |
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| T |
6326233 |
---aatcactactcaaacattaacttactctgtttccccttttttttagtagaac |
6326182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 6242439 - 6242565
Alignment:
| Q |
11 |
gaagaatatgttgtatcaatcaaaatttgagtttcaagaacaatggcagaaatagaagctacaattgcaaatgcaacttcaacttcaacttcatcagctt |
110 |
Q |
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| T |
6242439 |
gaagaatgtgttgtacttatcaaaagttaagtttgaagaacaacggcagaattaggagctacaattccaaatgcaacttgaacttgaacttcatcggatt |
6242538 |
T |
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| Q |
111 |
caacaaggtaaataacttcaattttca |
137 |
Q |
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| T |
6242539 |
caataaggtaaataacttcaattttca |
6242565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 676 - 778
Alignment:
| Q |
29 |
atcaaaatttgagtttcaagaacaatggcagaaatagaagctacaattgcaaatgcaacttcaacttcaacttcatcagcttcaacaaggtaaataactt |
128 |
Q |
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| T |
676 |
atcaaaagttgagtttgaagaacaatggcagaattaggagctacaattccaaatg------caacttcaacttcatcagattcaacaaggtaaataactt |
769 |
T |
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| Q |
129 |
caattttca |
137 |
Q |
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||||||||| |
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| T |
770 |
caattttca |
778 |
T |
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