View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7359_low_3 (Length: 705)

Name: NF7359_low_3
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7359_low_3
NF7359_low_3
[»] chr1 (6 HSPs)
chr1 (17-697)||(16792795-16793472)
chr1 (187-381)||(32734643-32734837)
chr1 (653-697)||(32735252-32735296)
chr1 (487-546)||(32735086-32735145)
chr1 (70-127)||(18434499-18434556)
chr1 (70-127)||(18420875-18420932)
[»] chr6 (5 HSPs)
chr6 (656-697)||(14876343-14876384)
chr6 (68-132)||(1275136-1275200)
chr6 (187-333)||(14876890-14877036)
chr6 (68-132)||(20861718-20861782)
chr6 (74-138)||(24838768-24838832)
[»] chr8 (4 HSPs)
chr8 (48-137)||(12361174-12361264)
chr8 (68-130)||(6509322-6509384)
chr8 (74-132)||(40157499-40157557)
chr8 (77-126)||(8603645-8603694)
[»] chr5 (4 HSPs)
chr5 (68-137)||(35553207-35553276)
chr5 (68-132)||(37588379-37588443)
chr5 (68-132)||(33234348-33234412)
chr5 (68-132)||(37526218-37526282)
[»] chr3 (1 HSPs)
chr3 (68-132)||(14548740-14548804)
[»] chr2 (1 HSPs)
chr2 (68-126)||(42621394-42621452)
[»] chr7 (3 HSPs)
chr7 (76-137)||(24895338-24895399)
chr7 (76-137)||(24909646-24909707)
chr7 (105-137)||(49060522-49060554)
[»] chr4 (1 HSPs)
chr4 (68-132)||(7694029-7694093)


Alignment Details
Target: chr1 (Bit Score: 613; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 17 - 697
Target Start/End: Complemental strand, 16793472 - 16792795
Alignment:
Q  17 atggaagagtttatagaaaattgaaaacaaatatgacatgtccataaatcgtttcaacttatttctacaagctctccagaataacatgtgaaaatagctt 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16793472 atggaagagtttatggaaaattgaaaacaaatatgacatgtccataaattgtttcaacttatttctacaagctctccagaataacatgtgaaaatagctt 16793373  T
Q  117 atagcttatataaaaataattacagtttaatgtagattttaannnnnnnnnnncttctctaattttactacagacatggaatccaaagtcaaaatctgag 216  Q
    |||||||||||||||||||||||| |||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||    
T  16793372 atagcttatataaaaataattacattttaatgtagattttaatttttttttc---tctctaattttactacagacatggaatccaaagtcaaaatctgag 16793276  T
Q  217 ctatatgcacattcagcagcagaggtagtgaaattggcaaagacaactgtggaagagttctttcaaattccaataggaataactgaagaactagttcaag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16793275 ctatatgcacattcagcagcagaggtagtgaaattggcaaagacaactgtggaagagttctttcaaattccaataggaataactgaagaactagttcaag 16793176  T
Q  317 atcttgctaatggattggaaagtctcttacaggactatatgatgtttgttgcagcatgtggtaagtactgtaaatacatgaaattaattaaagaataaat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16793175 atcttgctaatggattggaaagtctcttacaggactatatgatgtttgttgcagcatgtggtaagtactgtaaatacataaaattaattaaagaataaat 16793076  T
Q  417 atagccgaatacgaaatagcttatgcataagcacttgcaaaaaacaggttttaacttttaaagtacactctttttcaggttcaaaacaaagctatattcc 516  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16793075 atagtcgattacgaaatagcttatgcataagcacttgcaaaaaacaggttttaacttttaaagtacactctttttcaggttcaaaacaaagctatattcc 16792976  T
Q  517 tccacttcctgcattaacaagatgcaaccgcgattcaaagtttagcaagctgtggaagagagctgcaccttgtgctacaaatttatcagaactagatcat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16792975 tccacttcctgcattaacaagatgcaaccgcgattcaaagtttagcaagctgtggaagagagctgcaccttgtgctacaaatttatcagaactagatcat 16792876  T
Q  617 ataaacggaacaaatgaaggtcacaatccaaaaccatcaactagccgaggaacacaacgactctacattcgtctcaacacc 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16792875 ataaacggaacaaatgaaggtcacaatccaaaaccatcaactagccgaggaacacaacgactctacattcgtctcaacacc 16792795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 187 - 381
Target Start/End: Original strand, 32734643 - 32734837
Alignment:
Q  187 cagacatggaatccaaagtcaaaatctgagctatatgcacattcagcagcagaggtagtgaaattggcaaagacaactgtggaagagttctttcaaattc 286  Q
    |||||||||||||||||||| ||| | || ||||||||||| |||||  | ||| || ||||||||| | |||| |  ||||| || ||||| ||| |||    
T  32734643 cagacatggaatccaaagtctaaaacagaactatatgcacaatcagcttctgagctaatgaaattggtagagacgatcgtggacgaattcttccaagttc 32734742  T
Q  287 caataggaataactgaagaactagttcaagatcttgctaatggattggaaagtctcttacaggactatatgatgtttgttgcagcatgtggtaag 381  Q
    |||||| ||| || |||||  |||||||||| |||| | ||||||||||||  ||||| |  ||||| ||||  ||||||||| |||||||||||    
T  32734743 caatagcaattacagaagatttagttcaagaccttgttgatggattggaaatcctcttcctagactacatgaaatttgttgcatcatgtggtaag 32734837  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 653 - 697
Target Start/End: Original strand, 32735252 - 32735296
Alignment:
Q  653 tcaactagccgaggaacacaacgactctacattcgtctcaacacc 697  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||    
T  32735252 tcaactagccgaggaacacaacgcctctacattcgtatcaacacc 32735296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 487 - 546
Target Start/End: Original strand, 32735086 - 32735145
Alignment:
Q  487 tttttcaggttcaaaacaaagctatattcctccacttcctgcattaacaagatgcaaccg 546  Q
    ||||||||||||||||||||| || ||||||  ||||||| |||| ||||||||||||||    
T  32735086 tttttcaggttcaaaacaaagttacattcctttacttcctccattgacaagatgcaaccg 32735145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 18434499 - 18434556
Alignment:
Q  70 tcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatat 127  Q
    ||||||||||| |  ||||||||||| ||||| |||||||||||| ||||||||||||    
T  18434499 tcaacttatttttgtaagctctccaggataacttgtgaaaatagcatatagcttatat 18434556  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 18420875 - 18420932
Alignment:
Q  70 tcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatat 127  Q
    ||||||||||| |  ||||||||||  ||||| |||||||||||| ||||||||||||    
T  18420875 tcaacttatttttgtaagctctccaagataacttgtgaaaatagcatatagcttatat 18420932  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 656 - 697
Target Start/End: Complemental strand, 14876384 - 14876343
Alignment:
Q  656 actagccgaggaacacaacgactctacattcgtctcaacacc 697  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  14876384 actagccgaggaacacaacgcctctacattcgtctcaacacc 14876343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 1275200 - 1275136
Alignment:
Q  68 tttcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaa 132  Q
    ||||| |||||||| | ||||||||||| ||||||| |||||| |||||||||||||||| ||||    
T  1275200 tttcagcttatttccataagctctccaggataacatatgaaaacagcttatagcttatatgaaaa 1275136  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 333
Target Start/End: Complemental strand, 14877036 - 14876890
Alignment:
Q  187 cagacatggaatccaaagtcaaaatctgagctatatgcacattcagcagcagaggtagtgaaattggcaaagacaactgtggaagagttctttcaaattc 286  Q
    |||||||||||||||||||| ||||| ||||  |||||  | ||||  |  ||| |  |||| ||||| |||| || |||| ||||||||||||||||||    
T  14877036 cagacatggaatccaaagtctaaatcggagccgtatgcgaaatcagtggtggagctgatgaatttggcgaagaaaattgtgcaagagttctttcaaattc 14876937  T
Q  287 caataggaataactgaagaactagttcaagatcttgctaatggattg 333  Q
    |  | | ||||||||| ||  |||||||||| |||| | ||||||||    
T  14876936 cggttgcaataactgaggatttagttcaagaacttgttgatggattg 14876890  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 20861718 - 20861782
Alignment:
Q  68 tttcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaa 132  Q
    |||||||||||||  | ||| ||| || |||||| || ||||| |||||||||||||||||||||    
T  20861718 tttcaacttattttcataagttctacacaataacttgggaaaacagcttatagcttatataaaaa 20861782  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 24838768 - 24838832
Alignment:
Q  74 cttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaataatta 138  Q
    |||||||||| ||||||||||  ||| | | |||||  |||||||||||||||| ||||||||||    
T  24838768 cttatttctataagctctccatgatagcttatgaaatcagcttatagcttatatgaaaataatta 24838832  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 12361264 - 12361174
Alignment:
Q  48 tatgacatgtccataaatcgttt-caacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaataatt 137  Q
    ||||||||||||||||   |||| ||||||||||| |  |||||||| ||||||| | |||||| |||||||||||||||| |||| ||||    
T  12361264 tatgacatgtccataagctgttttcaacttatttccattagctctcctgaataacttatgaaaacagcttatagcttatatgaaaacaatt 12361174  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 6509322 - 6509384
Alignment:
Q  68 tttcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaa 130  Q
    ||||| |||||||| | ||||||||||| ||| | | |||||| |||||||||||||||||||    
T  6509322 tttcaccttatttcaataagctctccaggatagcttatgaaaacagcttatagcttatataaa 6509384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 40157557 - 40157499
Alignment:
Q  74 cttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaa 132  Q
    |||||||  ||||||||||| ||||||||| |||||| | |||||||||||||| ||||    
T  40157557 cttattttcacaagctctccggaataacatatgaaaacatcttatagcttatattaaaa 40157499  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 8603694 - 8603645
Alignment:
Q  77 atttctacaagctctccagaataacatgtgaaaatagcttatagcttata 126  Q
    ||||||||||||||||||| ||||| | || ||||||||||||| |||||    
T  8603694 atttctacaagctctccaggataacttatgcaaatagcttatagtttata 8603645  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 35553207 - 35553276
Alignment:
Q  68 tttcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaataatt 137  Q
    ||||| |||||||| | ||||||||||||||| | | ||||||||| ||||||||||||| |||| ||||    
T  35553207 tttcagcttatttccataagctctccagaatagcgtatgaaaatagtttatagcttatatgaaaagaatt 35553276  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 37588379 - 37588443
Alignment:
Q  68 tttcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaa 132  Q
    ||||| |||||||| | ||||||||||||||||| | |||||| | |||||||||||||| ||||    
T  37588379 tttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaaa 37588443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 33234412 - 33234348
Alignment:
Q  68 tttcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaa 132  Q
    |||||||| ||||  | ||||||| ||| ||||| |  |||||||||||||||||||||||||||    
T  33234412 tttcaactcatttacataagctcttcagcataacttacgaaaatagcttatagcttatataaaaa 33234348  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 37526218 - 37526282
Alignment:
Q  68 tttcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaa 132  Q
    ||||| |||||||| | ||||||||||||| ||| | |||||| | |||||||||||||| ||||    
T  37526218 tttcagcttatttccataagctctccagaacaacttatgaaaacaacttatagcttatatgaaaa 37526282  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 14548740 - 14548804
Alignment:
Q  68 tttcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaa 132  Q
    ||||| |||||||| | ||||||||||||||||| | |||||| | |||||||||||||| ||||    
T  14548740 tttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaaa 14548804  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 42621394 - 42621452
Alignment:
Q  68 tttcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttata 126  Q
    ||||| |||||||  ||||| ||||||||||||| | |||||| |||||||||||||||    
T  42621394 tttcagcttattttcacaagttctccagaataacttatgaaaacagcttatagcttata 42621452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 24895399 - 24895338
Alignment:
Q  76 tatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaataatt 137  Q
    |||||| | |||||||||| |||| | |||||||| | |||||||||||||| |||||||||    
T  24895399 tatttccataagctctccacaatatcttgtgaaaacaacttatagcttatatgaaaataatt 24895338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 24909707 - 24909646
Alignment:
Q  76 tatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaataatt 137  Q
    |||||| |||||||||||| |||| | | |||||| | |||||||||||||| |||||||||    
T  24909707 tatttccacaagctctccacaatatcttatgaaaacaacttatagcttatatgaaaataatt 24909646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 49060554 - 49060522
Alignment:
Q  105 tgaaaatagcttatagcttatataaaaataatt 137  Q
    |||||||| ||||||||||||||||||||||||    
T  49060554 tgaaaataacttatagcttatataaaaataatt 49060522  T

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Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 7694029 - 7694093
Alignment:
Q  68 tttcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatataaaaa 132  Q
    ||||| |||||||| | || |||||||| ||||| | |||||| ||||||||||||||| |||||    
T  7694029 tttcagcttatttccataaactctccaggataacttatgaaaacagcttatagcttatacaaaaa 7694093  T

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