View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7359_low_4 (Length: 702)
Name: NF7359_low_4
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7359_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 311 - 683
Target Start/End: Original strand, 11136633 - 11136993
Alignment:
| Q |
311 |
aaacgctataccaaatacaagttacgtgacgaatagaacaaaacaacaatgatacaaaagtacaatccaaagtcacacttgcacttcacacaaaatgtt- |
409 |
Q |
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| T |
11136633 |
aaacgctataccaaatacaagatacatgaccaatagaacaa-----caatgatacaaaagtacaatccaaagtcacacttgcacttc-cacaacatgttt |
11136726 |
T |
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| Q |
410 |
gcataatggatccacttttacactcagccgttgaaattggagagttacctaaaggggtaaatatgatttactcatagtcactactacagtggatacatga |
509 |
Q |
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| T |
11136727 |
gcataatggatccacttttacactcaaccgttgaaattggagagttacctaaaggggtaaatatgatttactcatggtcactactacagtggatac---a |
11136823 |
T |
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| Q |
510 |
tgtcattatgacatcattttggtttcttttccatattattttgaagttctaacaacaannnnnnnattactagtaagtaaataaattttgatttttaata |
609 |
Q |
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| T |
11136824 |
tgtcattatgacatcattttggtttcttttccatattattttgaagttctaacaacaatttttttattact----agtaaataaattttgatttttaata |
11136919 |
T |
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| Q |
610 |
tttgtattatgttgtctatgattgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgt |
683 |
Q |
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| T |
11136920 |
tttgtattatgttgtctatgattgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgt |
11136993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 632 - 683
Target Start/End: Original strand, 11149175 - 11149226
Alignment:
| Q |
632 |
tgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgt |
683 |
Q |
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| T |
11149175 |
tgtaacagggttgtgatgcatcagttttactgaacaaaactgataccgttgt |
11149226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 665
Target Start/End: Original strand, 11110084 - 11110123
Alignment:
| Q |
626 |
tatgattgtaacagggttgtgatgcatcagttttattgaa |
665 |
Q |
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| T |
11110084 |
tatgattgaaacagggttgtgatgcatcagttttgttgaa |
11110123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 626 - 672
Target Start/End: Original strand, 11118088 - 11118134
Alignment:
| Q |
626 |
tatgattgtaacagggttgtgatgcatcagttttattgaacaaaact |
672 |
Q |
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| T |
11118088 |
tatgattgaatcagggttgtgatgcatcagttttgttgaataaaact |
11118134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 680
Target Start/End: Original strand, 11095635 - 11095684
Alignment:
| Q |
631 |
ttgtaacagggttgtgatgcatcagttttattgaacaaaactgataccat |
680 |
Q |
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| T |
11095635 |
ttgtgacagggttgtgatggatcagttttgttgaacaacactaataccat |
11095684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 635 - 683
Target Start/End: Original strand, 11145244 - 11145292
Alignment:
| Q |
635 |
aacagggttgtgatgcatcagttttattgaacaaaactgataccattgt |
683 |
Q |
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| T |
11145244 |
aacagggttgtgatgcatcagttttgttgaataacactgctactattgt |
11145292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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