View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7359_low_5 (Length: 647)
Name: NF7359_low_5
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7359_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Original strand, 52386195 - 52386661
Alignment:
| Q |
18 |
tgataaacctcgtcgtcatggctgcaaagtcagctgcggagatgttagaaaggataacgggattctgtaacaaaattataaacatgaaatactgtatatt |
117 |
Q |
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| T |
52386195 |
tgataaacctcgtcgtcatggctgcaaagtcagctgcggagatgttagaaaggataacgggattctgtaacaaaattataaacatgaaatactgtatatt |
52386294 |
T |
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| Q |
118 |
cttataattcacttgagacatcataccaggattttgatttttcatgttgacaacatccatactctgtattgttgattttatttaccatttattcatttac |
217 |
Q |
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| T |
52386295 |
cttataattcacttgagacatcataccaggattttgatttttcatgttgacaacatccatactctgtattgttgattttatttaccatttattcatttac |
52386394 |
T |
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| Q |
218 |
agtaagttaacaacattcatacttttataatcatatatatgacaggaacttcgctaccaatctgaaagatcaaaagttattggacgcatatgcaatggtt |
317 |
Q |
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| T |
52386395 |
agtaagttaacaacattcatacttttataatc----atatgaaaggaacttcgctaccaatctgaaagatcacaagttattggacgcatatgcaatggtt |
52386490 |
T |
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| Q |
318 |
gctataagaatttcttatcttctactaccatttaatatacttatatccaaaatcatctttaattaggtcccttacacattgtc-nnnnnnnnnnnggtct |
416 |
Q |
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| T |
52386491 |
gctataagaatttcttatctt---ctaacatttaatatacttatatccaaaatcatctttaattaggtcccttacaaattgtcaaaaaaaaaaaaggtcc |
52386587 |
T |
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| Q |
417 |
cttacatggtttacctacagttctattgttcaataattaaaagccggatgaattagtagttaaattcctctctt |
490 |
Q |
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| T |
52386588 |
cttacatggtttacctacagttctattgttcaataattaaaagccggatgaattagtagttaaattcctctctt |
52386661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 534 - 627
Target Start/End: Original strand, 52386664 - 52386759
Alignment:
| Q |
534 |
aagattttgaaagtt--gtttgcaacttgtacagaatcataagaaaattgaaacaagattatttactgatcagattctttactttagcatcagtaa |
627 |
Q |
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| T |
52386664 |
aagattttgaaagttttgtttgcaacttgtacagaatcataagaaaattgaaacaagattatttactgatcagattctttactttagcatcagtaa |
52386759 |
T |
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