View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7359_low_6 (Length: 617)
Name: NF7359_low_6
Description: NF7359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7359_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 602
Target Start/End: Original strand, 6961162 - 6961798
Alignment:
| Q |
1 |
cattttataaactgtatccataaatttacacaaata---------agtcaatccactcaaaaatctttatctaaatttataaattggtcataaatctttg |
91 |
Q |
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| T |
6961162 |
cattttataaactgtatccataaattttcacaaatattacaaataagtcaatccactcaaaa-tctttatctaaatttatcaattggtcataaatctttg |
6961260 |
T |
|
| Q |
92 |
atatatgataccaaatattcatttgagaagcttccaacgtggcaacaaacaaaaatccattaacagtggcttcattcattcatccgataagagatggcct |
191 |
Q |
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| T |
6961261 |
atatatgataccaaatattcatttgagaagcttccaacgtggcaacaaacaaaaatccattaacagtagcttgattcattcatccgataagagatggcct |
6961360 |
T |
|
| Q |
192 |
tatcctatcaaaaatcttactcacac---agccatcaaaacagagtactctgtttagtcggtgtctattctcatcctccacaccaagctacaaagtactt |
288 |
Q |
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| T |
6961361 |
tatcctatcaaaaatcttactcacaccacagccatcaaaacagagtactctgtttagtcggtgtctattctcatcctacacacaaagctacaaagtactt |
6961460 |
T |
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| Q |
289 |
aactctcaaattaaaattaaaat------aacaataagaaaaaca------------------agcagcaatggcagtatcactacaagctgcagctaca |
364 |
Q |
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| T |
6961461 |
aactctcaaattaaaattaaaattaaaataacaataagaaaaacactctggtgaaaaaaaaatagcagcaatggcagtatcactacaagctgcagctaca |
6961560 |
T |
|
| Q |
365 |
ctcatgcaaccaactaagattggtatcaataatcgtagcaccactttacatctcaagtcaacacaatccatttctaaggcttttggcttggaacacaatg |
464 |
Q |
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| T |
6961561 |
ctcatgcaaccaactaagattggtatcaataatcgtagcaccactttacatctcaagtcaacacaatccatttctaaggcttttggcttggaacacaatg |
6961660 |
T |
|
| Q |
465 |
gagctaagctcacttgttctcttcaagacatagctcataggtttgctgattctgctaaaattgcaggatttgctcttgcaacctctgctcttgttgtttc |
564 |
Q |
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| T |
6961661 |
gagctaagctcacttgttctcttcaggacatagctcataggtttgctgattctgctaaaattgcaggatttgctcttgcaacctctgctcttgttgtttc |
6961760 |
T |
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| Q |
565 |
tgtatgtttcactttgtctctcttctattcatcattcc |
602 |
Q |
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| T |
6961761 |
tgtatgtttcactttgtctctcttctattgatcattcc |
6961798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 489
Target Start/End: Complemental strand, 33607624 - 33607533
Alignment:
| Q |
398 |
cgtagcaccactttacatctcaagtcaacacaatccatttctaaggcttttggcttggaacacaatggagctaagctcacttgttctcttca |
489 |
Q |
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| T |
33607624 |
cgtagcaacagtttgcagcttaagtctactcaatctgtttctaaggcttttggtttggaacactatggagctaaggttacttgttcacttca |
33607533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 519 - 572
Target Start/End: Complemental strand, 33607491 - 33607438
Alignment:
| Q |
519 |
ctaaaattgcaggatttgctcttgcaacctctgctcttgttgtttctgtatgtt |
572 |
Q |
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| T |
33607491 |
ctaagattgctggatttgctcttgctacctctgctctcgttgtctctgtatgtt |
33607438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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