View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7360_low_2 (Length: 371)

Name: NF7360_low_2
Description: NF7360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7360_low_2
NF7360_low_2
[»] chr6 (1 HSPs)
chr6 (18-355)||(8486696-8487011)
[»] chr8 (3 HSPs)
chr8 (254-331)||(36036649-36036726)
chr8 (237-328)||(40481383-40481475)
chr8 (215-331)||(11623700-11623812)
[»] chr4 (2 HSPs)
chr4 (237-313)||(21014686-21014762)
chr4 (110-159)||(21014850-21014899)
[»] chr2 (3 HSPs)
chr2 (237-331)||(9044048-9044141)
chr2 (110-159)||(10003724-10003773)
chr2 (237-293)||(10003581-10003637)
[»] chr3 (1 HSPs)
chr3 (113-159)||(44112039-44112085)
[»] chr7 (3 HSPs)
chr7 (261-331)||(44680077-44680149)
chr7 (102-159)||(44680260-44680317)
chr7 (287-331)||(687477-687521)
[»] chr1 (1 HSPs)
chr1 (237-313)||(36353013-36353089)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 8487011 - 8486696
Alignment:
Q  18 gtaacatcatcaatatggtttattatatctttcttaatacataaaatagttagaccattcgaaaatatggtaacatcattcaaccttttttggtaacatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||           ||| |  ||     |||||| || |||||    
T  8487011 gtaacatcatcaatatggtttattatatctttcttaatacataaaatggttagaccattc-----------aactt--tt-----tttttttgtgacatt 8486930  T
Q  118 gactatatcaagtagtttttaaataatttcaacttcgaaaaaattatttgtaaagatgcaaagtcacgagaattcaaaaagaaattgaaacattttaata 217  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8486929 gactatatcaagtagtttttaaataattttaacttcgaaaaagttatttgtaaagatgcaaagtcacgagaattcaaaaagaaattgaaacattttaata 8486830  T
Q  218 acaatctgcacctttgacagacaaactcagggattccaaatgctgacatcaacatatttgacaaagatttttgcaacactttcaattctgaaaaaagatc 317  Q
    |||||||||| ||||    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8486829 acaatctgcagcttt----gacaaactcaaggattccaaatgctaacatcaacatatttgacaaagatttttgcaacactttcaattctaaaaaaagatc 8486734  T
Q  318 atttgcatcaacatgcaaacctccctttacaatttaag 355  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  8486733 atttgcatcaacatgcaaacctccctttagaatttaag 8486696  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 36036649 - 36036726
Alignment:
Q  254 caaatgctgacatcaacatatttgacaaagatttttgcaacactttcaattctgaaaaaagatcatttgcatcaacat 331  Q
    |||||| ||||||| | |||||||||||| |  ||| ||||||||||||||| |||||||||||||||||||||||||    
T  36036649 caaatgttgacatcgaaatatttgacaaatacatttacaacactttcaattcagaaaaaagatcatttgcatcaacat 36036726  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 40481383 - 40481475
Alignment:
Q  237 gacaaactcagggattccaaatgctgacatcaacatatttgacaaagatttttgcaacactttcaattctga-aaaaagatcatttgcatcaa 328  Q
    |||||||||| | |||  |||| | ||||||| |||||||| ||||||  ||||||||||||||||||| || ||||||||||||||||||||    
T  40481383 gacaaactcaagaattttaaataccgacatcatcatatttggcaaagacatttgcaacactttcaattcagataaaaagatcatttgcatcaa 40481475  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 331
Target Start/End: Original strand, 11623700 - 11623812
Alignment:
Q  215 ataacaatctgcacctttgacagacaaactcagggattccaaatgctgacatcaacatatttgacaaagatttttgcaacactttcaattctgaaaaaag 314  Q
    |||||||| |||||||||||||    |||| | | ||| |||||| |||||||||||||| ||||| | |  |||| ||||| || ||||  |||||| |    
T  11623700 ataacaatatgcacctttgaca----aactgaagaatttcaaatgttgacatcaacatatgtgacacaaacatttgtaacacctttaatttagaaaaatg 11623795  T
Q  315 atcatttgcatcaacat 331  Q
    |||||||||||||||||    
T  11623796 atcatttgcatcaacat 11623812  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 21014762 - 21014686
Alignment:
Q  237 gacaaactcagggattccaaatgctgacatcaacatatttgacaaagatttttgcaacactttcaattctgaaaaaa 313  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||  |||||||||| ||| |||  |||||||    
T  21014762 gacaaactcaagaatttcaaatgctgacatcaacatatttgacaaagacatttgcaacaccttcgatttagaaaaaa 21014686  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 21014899 - 21014850
Alignment:
Q  110 gtaacattgactatatcaagtagtttttaaataatttcaacttcgaaaaa 159  Q
    ||||||||||| || ||||||||||||| |||||||| |||||| |||||    
T  21014899 gtaacattgacaatctcaagtagtttttcaataattttaacttctaaaaa 21014850  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 9044141 - 9044048
Alignment:
Q  237 gacaaactcagggattccaaatgctgacatcaacatatttgacaaagatttttgcaacactttcaattctgaaaaaagatcatttgcatcaacat 331  Q
    |||||||||| | ||| || |||| |||||||||| |||||| |||||  |||||| || ||||| || ||||||| ||||||||||||||||||    
T  9044141 gacaaactcaagaatttcatatgccgacatcaacacatttgataaagagatttgcagcattttcatttatgaaaaa-gatcatttgcatcaacat 9044048  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 10003773 - 10003724
Alignment:
Q  110 gtaacattgactatatcaagtagtttttaaataatttcaacttcgaaaaa 159  Q
    ||||||||||| || ||||||||||||| ||| |||| ||||||||||||    
T  10003773 gtaacattgacaatctcaagtagtttttcaatcattttaacttcgaaaaa 10003724  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 10003637 - 10003581
Alignment:
Q  237 gacaaactcagggattccaaatgctgacatcaacatatttgacaaagatttttgcaa 293  Q
    |||||||||| | ||| |||||| ||||||||||| ||||| ||||||| |||||||    
T  10003637 gacaaactcaagaatttcaaatgttgacatcaacacatttggcaaagatatttgcaa 10003581  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 44112085 - 44112039
Alignment:
Q  113 acattgactatatcaagtagtttttaaataatttcaacttcgaaaaa 159  Q
    |||||||| || ||||||||||||| |||||||| ||||||||||||    
T  44112085 acattgacgatctcaagtagtttttcaataattttaacttcgaaaaa 44112039  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 44680149 - 44680077
Alignment:
Q  261 tgacatcaacatatttgacaaagatttttgcaacactttcaattctg--aaaaaagatcatttgcatcaacat 331  Q
    ||||| ||||| ||||||||||||| |||||| |||||| ||||| |  |||||| ||||||||||| |||||    
T  44680149 tgacaccaacacatttgacaaagatatttgcatcacttttaattcaggaaaaaaatatcatttgcattaacat 44680077  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 44680317 - 44680260
Alignment:
Q  102 cttttttggtaacattgactatatcaagtagtttttaaataatttcaacttcgaaaaa 159  Q
    ||||||| || |||||||| |||| || |||||||| |||||||| ||||||||||||    
T  44680317 ctttttttgtgacattgacgatattaaatagtttttgaataattttaacttcgaaaaa 44680260  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 687477 - 687521
Alignment:
Q  287 tttgcaacactttcaattctgaaaaaagatcatttgcatcaacat 331  Q
    |||| ||||| |||||||| |||||| ||||||||||||||||||    
T  687477 tttgaaacacattcaattcagaaaaatgatcatttgcatcaacat 687521  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 36353089 - 36353013
Alignment:
Q  237 gacaaactcagggattccaaatgctgacatcaacatatttgacaaagatttttgcaacactttcaattctgaaaaaa 313  Q
    |||||||||| | ||| |||||||| ||||||||||| ||| ||||  | ||||||||| ||||| ||| |||||||    
T  36353089 gacaaactcaagaatttcaaatgctaacatcaacatacttggcaaaagtatttgcaacattttcagttcagaaaaaa 36353013  T

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