View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7360_low_5 (Length: 295)
Name: NF7360_low_5
Description: NF7360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7360_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 2842531 - 2842809
Alignment:
| Q |
1 |
agaacatcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgttctgtattat |
100 |
Q |
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| T |
2842531 |
agaacatcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgttctgtattat |
2842630 |
T |
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| Q |
101 |
tcgtacaatcttgcttaacaataggtacagtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttccattcactaag |
200 |
Q |
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| T |
2842631 |
tggtacaatcttgcttaacaataagtacagtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttccattcactaag |
2842730 |
T |
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| Q |
201 |
ccgcacctctgctgacttcgaatgcaactcgcaactttctgtcaaactcatttgcctataagtttcaagttccttttcc |
279 |
Q |
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| T |
2842731 |
ccgcacctctgctgacttcgaatgcaactcgcaactttctgtcaaactcatttgcctaaaagtttcaagttccttttcc |
2842809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 2838505 - 2838590
Alignment:
| Q |
1 |
agaacatcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttc |
86 |
Q |
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| T |
2838505 |
agaacatcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttc |
2838590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 2838645 - 2838679
Alignment:
| Q |
141 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
175 |
Q |
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| T |
2838645 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
2838679 |
T |
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